G407467


Basic Information

Item Value
gene id G407467
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4636610 ~ 4637425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468172
GGTAGTTGTGATGATGTTTTGGATGGTTTCTAGAATGTTACCTGATGGTTGGGCATTGCTAGATGGTTTCTATGATGTTTTGTGTGGTTGCTAAGGTGTTGCTAGGTGATTGTTATGATGTTTTTGTTTTTTTCTAGGATGTTGCTAGGGGTTGTACATTGCTAGGGGTTTCTATGATTTTTTGAGTGGTTGCTGGGGTGTTGCTAAGTGGTTGTTATGATGTTTTGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468172 True 230 lncRNA 0.40 2 4636610 4637425

Neighbor

gene id symbol gene type direction distance location
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding downstream 27257 4603391 ~ 4609353 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding downstream 42490 4587794 ~ 4594120 (-)
CI01000299_04456420_04468754 NA coding downstream 167160 4456229 ~ 4469450 (-)
CI01000299_04398464_04403711 NA coding downstream 232899 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 248590 4370401 ~ 4388020 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 8214 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 21470 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 71078 4708503 ~ 4714088 (-)
CI01000299_04741460_04746667 NA coding upstream 104022 4741447 ~ 4746667 (-)
CI01000299_04861862_04862244 NA coding upstream 224152 4861577 ~ 4862593 (-)
G407420 NA non-coding downstream 50562 4571131 ~ 4586048 (-)
G407422 NA non-coding downstream 72946 4504710 ~ 4563664 (-)
G407414 NA non-coding downstream 82533 4478989 ~ 4554077 (-)
G407434 NA non-coding downstream 88804 4523411 ~ 4547806 (-)
G407429 NA non-coding downstream 122263 4509122 ~ 4514347 (-)
G407476 NA non-coding upstream 39685 4677110 ~ 4677446 (-)
G407477 NA non-coding upstream 40593 4678018 ~ 4678228 (-)
G407475 NA non-coding upstream 66699 4704124 ~ 4704801 (-)
G407526 NA non-coding upstream 184616 4822041 ~ 4823551 (-)
G407562 NA non-coding upstream 302266 4939691 ~ 4939939 (-)
G407413 NA other downstream 85889 4475994 ~ 4550721 (-)
G405053 NA other downstream 2618560 2017687 ~ 2018050 (-)
G404976 NA other downstream 2755622 1855639 ~ 1880988 (-)
G404784 NA other downstream 2976610 1659655 ~ 1660000 (-)
CI01000299_04913779_04927715 NA other upstream 288543 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 803912 5427661 ~ 5443433 (-)
G407805 NA other upstream 1190411 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1894576 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G62568 NA non-coding NC_056706.1 CM032075.1 9710646 ~ 9710996 (-)
mexican tetra (Astyanax mexicanus) G68596 NA non-coding NC_035903.1 CM008306.1 33987761 ~ 33988897 (+)