G409006


Basic Information

Item Value
gene id G409006
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1878286 ~ 1878873 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469935
ACCTGCAGAAGCCTCCATCTCATGTTGAGGTCATCAATTCTGCTCAGGTTATCTGGAGAGAGCTGAATGTCAGGTGGTCTAAATGTGGAGGCCAGTTGGTTGACCTGATTTACATTATCCTGAATGGGAGCTATCTCTTCCTGGAACACCTTTACTCTGTCTATGTGGTTTTGCAAATCATCTACAAGCAGCTCTCCAACAGGCTTCCAAGAATTCTTCACGGTCTCAGCCTGCCGTAGCTTGAAGTCCAGCTGATCCTGGGCGTCCTGCAGCTCCATCAGCCTCTCCATGGCCAATTCCAGCTGTTGCTGCCAGTCAACAGCAGCTGCACCCAGATTCTTCCATCGCACCGTTACATCCTCCACTTCTTTACGCAATATGCGGCCCACATTTTGAACCCTCTCCTCAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469935 True 410 lncRNA 0.50 2 1878286 1878873

Neighbor

gene id symbol gene type direction distance location
CI01000300_01801423_01807504 CNGA3 coding upstream 70161 1801423 ~ 1808125 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding upstream 94485 1771784 ~ 1783801 (+)
CI01000300_01753916_01754815 NA coding upstream 123306 1753916 ~ 1754980 (+)
CI01000300_01571005_01611574 DACHB coding upstream 266712 1569612 ~ 1611574 (+)
CI01000300_01527830_01531871 NA coding upstream 346267 1527830 ~ 1532019 (+)
CI01000300_01976057_01980856 NA coding downstream 97184 1976057 ~ 1981187 (+)
CI01000300_02313596_02320912 NA coding downstream 433642 2312515 ~ 2321088 (+)
CI01000300_02340225_02344792 NA coding downstream 459915 2338788 ~ 2344976 (+)
CI01000300_02356651_02369301 EIF3B coding downstream 477523 2356396 ~ 2370981 (+)
CI01000300_02372157_02389226 NA coding downstream 492894 2371767 ~ 2389411 (+)
G408976 NA non-coding upstream 91562 1786494 ~ 1786724 (+)
G408929 NA non-coding upstream 133513 1735498 ~ 1744773 (+)
G408934 NA non-coding upstream 147859 1725424 ~ 1730427 (+)
G408942 NA non-coding upstream 193692 1684267 ~ 1684594 (+)
G408909 NA non-coding upstream 245403 1632453 ~ 1632883 (+)
G409018 NA non-coding downstream 51358 1930231 ~ 1959590 (+)
G409028 NA non-coding downstream 84399 1963272 ~ 1964097 (+)
G409117 NA non-coding downstream 426196 2305069 ~ 2306889 (+)
G409141 NA non-coding downstream 458690 2337563 ~ 2337787 (+)
G408910 NA other upstream 243317 1633030 ~ 1634969 (+)
G408498 NA other upstream 857552 1017067 ~ 1020734 (+)
G408510 NA other upstream 901187 976600 ~ 977099 (+)
G409984 NA other downstream 1392812 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2022315 3901148 ~ 3902892 (+)
G410382 NA other downstream 2244825 4123698 ~ 4124416 (+)
G410388 NA other downstream 2316773 4195646 ~ 4196555 (+)

Expression


Co-expression Network