G409018


Basic Information

Item Value
gene id G409018
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1930231 ~ 1959590 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469950
CCAGGACATACTTTTTGCTCTTCAATTTGACGCTTTATGTCATCAAGTTCAGGTCCTAAAGGCTGTGTGCCCATTCTTTTAATCCGAGTTTCGGTCGTGTCCAGCCAATCAGAGAGCTGCTTCAGCTGCTGGTGCTGCAGGTCCATCAAAACTTCATGAAGTTGCTCTGTCGCTCCATGCTGGATACACGCAGATGTTCCCAGCGAGAGTTGAGCAGATTCATCTGTTCCCGCACCTCTCTCTCTTCATCATCAGTCAGCTGCCCTCCAGACAACAACACACTTCCTGCTTTCAGAACCCGGCCCACACTGCCCTGATGAGACGTTAACTCCACCATGTAGCCCTCATGGGTGTGAAACTGCTCTTTGACTTCGTCGACAAAAGAAGAGATGGGAGGCTGTGCTTGCAAGCCGTCCTCCGCAGAGAGCAGCCAGGTCAGGACCTCCTCCAGGGCACTCTGGTAGCTTTCCAGCTCATTTAGCCCCTGTGGCAGGGGACTGGGGGACGGTCGCAGTTCATCGGGCTTGTCTGGAGACTGTGTGGTGAGAAACTTCCTCTGCTGTTCAGGCGTCTTGACGTAGGCAGCTTGAGTGAAGGCATAGCTTTTGAATCGAGGCTTATAGGAGGGAGACGGGCTGCGAACATGACTCTGGGCCACACTGACTGTGATCTGCTGGGAGTAACGCTGCTGGGTTTGAAAGAGGAAGTGCTCCTCCTTGGCTACTGTAGCTCGAGGGAGGGTCTCCACCTCTTGTATTGCCTCCTTACTCACGCCATGGGGCAGCACTTGGAACAGGGAGGTGACGTACATAATGATGGATTTCTTATCAGGATGAGTTGTAGCAACATCCTCAGGGTCCAACAGTCGGTCGATGCCTAAACTCTTCTCTGCAATGTTGAAGGCATGATCCAGTCTCTCAATGGCATTATCCTGTTGCTCCACCACACTCCAGTTAAACAGCTCCGGCCTGTGGCTGTGAATGAGAGCATTGAAGGCAAGTCCATCTGTCCAGCTACTGGAGAAGTTGACCACATTGATGTCTTTGTAGTTTTTAGTGGACTGCCTGACCCAACTTAACAGAATCTTTTCACTGTTGGTCTGCTGTAAGTCTGCCATGACATCTTTCATCACATCCTTAACCTGCCAGTGGAGAATGATGCTCCAGATGAGCCCCAGGGTCAGTTTATGATTCCCATCTACAATGTCAGCTCCTCCAATGTTCACCAGATCAACATTGTTCTTCTGAAGGATCTGCAGGGCCCTGTTAACATTGTTGAGGGAGTGCACTCGAGTGAAACCACGTTCTTTAACTAGTTCATGGCCAACCAGAACCTCCAGGAGTTCAAGAAGACGTCGACCATCACACAGATCGGTAAAGAGGTCATCAACAGGGGGTCTTCTTGTCTTAGCAAACTGTGAGTTTATCCATTTCGTGAAGGTTTTCTTTTGAACATCTTCTCTTTCATCTGATCGAGTTTTGATGATTTCTCCGAATTCATCCTCAAAACCTTCCTCCCATTGGTCCTGTAGGCTCACTGCTTCAGCCATAAGATCCAAACTGCCGTTGAATCCTTTAATCCTGTAGTTTTATAAACAGAAAAAGAGAAGAGACACAAAGACCCCACCAATGACAGGAATCACTGCCCTCTGAGCAAACCGAAATTTTTGTGAATGACACAGGGACGAGACTGTCTGTGGACTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469950 True 1704 lncRNA 0.49 12 1930231 1959590

Neighbor

gene id symbol gene type direction distance location
CI01000300_01801423_01807504 CNGA3 coding upstream 122106 1801423 ~ 1808125 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding upstream 146430 1771784 ~ 1783801 (+)
CI01000300_01753916_01754815 NA coding upstream 175251 1753916 ~ 1754980 (+)
CI01000300_01571005_01611574 DACHB coding upstream 318657 1569612 ~ 1611574 (+)
CI01000300_01527830_01531871 NA coding upstream 398212 1527830 ~ 1532019 (+)
CI01000300_01976057_01980856 NA coding downstream 16467 1976057 ~ 1981187 (+)
CI01000300_02313596_02320912 NA coding downstream 352925 2312515 ~ 2321088 (+)
CI01000300_02340225_02344792 NA coding downstream 379198 2338788 ~ 2344976 (+)
CI01000300_02356651_02369301 EIF3B coding downstream 396806 2356396 ~ 2370981 (+)
CI01000300_02372157_02389226 NA coding downstream 412177 2371767 ~ 2389411 (+)
G409006 NA non-coding upstream 51358 1878286 ~ 1878873 (+)
G408976 NA non-coding upstream 143507 1786494 ~ 1786724 (+)
G408929 NA non-coding upstream 185458 1735498 ~ 1744773 (+)
G408934 NA non-coding upstream 199804 1725424 ~ 1730427 (+)
G408942 NA non-coding upstream 245637 1684267 ~ 1684594 (+)
G409028 NA non-coding downstream 3682 1963272 ~ 1964097 (+)
G409117 NA non-coding downstream 345479 2305069 ~ 2306889 (+)
G409141 NA non-coding downstream 377973 2337563 ~ 2337787 (+)
G409155 NA non-coding downstream 446921 2406511 ~ 2406856 (+)
G408910 NA other upstream 295262 1633030 ~ 1634969 (+)
G408498 NA other upstream 909497 1017067 ~ 1020734 (+)
G408510 NA other upstream 953132 976600 ~ 977099 (+)
G409984 NA other downstream 1312095 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1941598 3901148 ~ 3902892 (+)
G410382 NA other downstream 2164108 4123698 ~ 4124416 (+)
G410388 NA other downstream 2236056 4195646 ~ 4196555 (+)

Expression


Co-expression Network