XLOC_001369 (glra3)


Basic Information

Item Value
gene id XLOC_001369
gene name glra3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38416106 ~ 38538284 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002248
GGCACGAGCAAAGTGAAGTATCTACATTCAGTTCTCTATAATTGCAAGTATAAGCGCCTCACATGCACGAGTACAGCGCGAGTGGAGAAGCGCACTGTCAGTCAAGCGCGCGGCGCGCACGGGGCGGTCTTTGCTTAGAAATGTCTGAATATGTCAAGAATCACTTCAGCTCTCTCACGCTTTCAAACAGCGCTCCATCACTACGAGGGAAGACTATCGTATGCGTTTCTTTAGCTTCGTAAGATTATGAGGGATTTCTCCGCGACTGGCGTGCGCAGCGAGCCTACAGTGCACAGGAGTGAAGCGCTGTCCGGGGTCCTGAAGTCAAGAAGCCGGAGGTGCTGAAGAGCGCGGGCGATCACGGAGGACTGCATGTCTGTGCCAATCCAGTCTTGAGATGACTCGGAAAAGACTGCGCTCTGTGGCTGCTTGGGGATTCATTGCGTGGGAAATAGGGATTCTGTTGAGTTTGGTTGCATCAAAAGAACCAGAAAGCCCTCGAAGGAGAGCAGCACCCATGTCACCCTCTGACTTTCTTGATAAGCTCATGGGAAGAACCTCAGGTTATGATGCCAGAATTAGGCCAAATTTTAAAGGTCCGCCTGTGAATGTAACATGCAACATATTTATTAACAGTTTTGGCTCCATCGCAGAGACAACTATGGATTACAGAGTGAACATATTCCTCCGGCAGAAGTGGAACGACCCCCGGTTAGCTTACAGCGAATACCCGGATGACTCTCTGGACCTGGATCCCTCTATGTTGGACTCCATTTGGAAGCCTGATCTGTTCTTTGCCAATGAGAAGGGAGCACATTTCCACGAGGTCACCACTGACAACAAGCTCTTGAGAATATTCAAAAATGGAAACGTCCTCTATTCAATTAGATTGACTCTGACGCTCTCGTGTCCGATGGATCTAAAGAATTTCCCCATGGATGTGCAGACGTGCATAATGCAGCTGGAGAGTTTTGGTTACACAATGAATGACCTGATCTTTGAGTGGCAAGAAAAGGGACCCGTGCAGGTGGCTGATGGACTGACCCTTCCACAGTTCATCCTCAAAGACGAGTCTGATTTGAGATACTGCACCAAGCACTACAACACAGGCAAGTTCACATGCATTGAGGTACGGTTTCACCTGGAAAGACAGATGGGCTACTACCTGATCCAGATGTACATTCCCAGCCTGCTCATCGTCATCCTCTCCTGGGTCTCCTTCTGGATCAACATGGATGCGGCTCCTGCTCGTGTGGCGTTGGGAATCACTACAGTGCTCACAATGACAACGCAGAGCTCTGGTTCCAGAACATCCTTACCTAAGGTGTCCTATGTGAAGGCTATCGACATCTGGATGGCTGTGTGTTTGCTGTTTGTGTTTTCGGCACTGTTGGAGTATGCTGCAGTCAACTTTGTTTCAAGGCAACATAAGGAACTGTTGCGATTCCGGCGGAGAAGGAAGAAGTCTGGCAAGGAGGAGGAGGTGCGGGAGAGCCGGCTGAGCTTTACGCCAAACGCAGGGAAAGACGGTGCTGTGCCCAAAACTGCTAACAATGCAGCCACAACACCATCTGAACCCGCTGTTGCTCCCGGAAAGAGTCACGAGGAAATGAGAAAACTCTTCATCGATCGAGCCAAAAAGATCGACACTGTGTCTCGTGCCGGATTCCCACTGGCCTTCCTGTTTTTCAATATTTTCTATTGGGTTCTATACAAAATCCTTCGCCACGAGGATGTGCACAAGCCATAGAAGGACCATGGTTTGTGGACGAACTGCATATCGCTGAACTCTGGTGAACATTTCCTGCCAAGATCTATGCTGGAGTCTGAAaacgactgagaaaaactgtgatGTCAAGGACCAAATGGCTACATTCAATGGTTTGTTTGTGTTGTACACCCATATAGACACTGCGCTCACTATGCAAAGGATAGACATTTGTAGGGACACTTACACACCTGTCCTGCAACTGAACCAACAGTGGACAGCACTTCTACACATTTTTAATACAGAAGCACAGTCCGACACTGACTACTACTGCCCCCTGTTGAGacaatgtgtgcgtgtgtttgtctTACACTGGTTTTTGTTGACTTTGTCGTCTTACAGCTTTACTGCCAATGTTCTGTGTTGTATTTTTCATATACAGCTATTGAATATAGCAGAGTGCAAGAGCAGAGATCAGTATTATAAAACTTTCCACACAATGTGTAATGTTGATTATTTTATAACAaagtatttaatagtttttttttttaaacattacccTTAATCATTTTCATCACAACATGATCGTCGACCAGCTCTAAAAACCAGCATCCAGGCCAAAAACATTCTGAGCTAAATCTCAAGAATGCCCTTGAACCAGCaaagattgttttgtttgtttacagctACCTTAATGGCTTCAAGAAAGCACAATTTGAAAACTTTAATTGCTAGCGTACTGTCAGCAACCACAGAGAAATTGAAACCATCTTTCAAGTCCAGCGCAAGTTTCTCTTAAACAAAAGCATTACTGTTCAAAAACCATTGTTAGTTACGTCAAACAAATGATGCCACTGCAGAATAATTCAGCTGGGAGTGAATTCTGTGTTACAAGTTCATAAATGGAGAAAAGAATTAAAGGAAGGCTGCAGTCTCGGCCAATATGTTATACAAGTCCTCCGAcaacgaaaaaaatatataattaagtgTCTCAAAATGATCATTTGAATGGTTTTTAACCTAATCTAATTGCATGTATGGCGATTATTTAACTATAAAATTTAAGTGGACTATAAAAGACTATTTAAATACTGCCTCTAAAGTTCATTTGAGTGCTATTATAAACATACAGATGTGAAGGGAACACATTTTCAGTTTATCCAGATTGACCAggtatgttttaatatttaaaaataaatgcaaaaagcaTGACATTTAGATGTTATGCAGTTATCCACCAAATATTGCTTTCTTAATCCATTTAAAGTTAAAACACTGGCAAATACAAACATTTCTGAAAATATGACACCCTTTTGTTATTTTGACTAGatgtaaatgtgattttaaatttaaattgaggATATGTGATCaataatttgtaaaacaaaaataaatattatattatatttgaatgcataactataaattataaattcAGAAAGACTGAGAATTTCAAAGTCTCTTATTTTCTCCCATATCTCTGTATAAatctaaaattgtgaaatgtttatttattttgttgtattcagttttgtttttttgtttttttttcaatgatgtGTTAGATAACACTGTTTAAAAACACTGGGaccaggcttttttttttattttggtcatGATGACGTTGATGACCTTTTGTCTGGAATAATTGTCTTTTCTTTTGAAACTAAATGAGTCTGCTGAAAAACTGTGCCATAGAAATTTTCGAAGCATATCTGTTCTCACACATTCCTACGAGTAAATAGAGCAGCGATGTTGTGTTTGAAACATCATCTGACATCAGCATTTGGCGCACATATTATAGAATGGATTCAAGAATCCCCCAGACATTTACAATACAATGCAAGagcatttgtaatttattttgtacaaacataattaaatgttatGCATGACCTCAAGTCTGATGTACTTCCTTTTCAGTCAAAAAGAAGCTGTCAGTCAAAATGTTCTTATTGCTATTAAGGCTACAGGTGAGATGCTTTGTTCTTCTATGTACAGATGTAAATACATTTGGCCACTTTTTTGCTTTACAGTGTCGGTGTTATAGACATTACAC

Function

symbol description
glra3 Enables extracellularly glycine-gated ion channel activity. Predicted to act upstream of or within chloride transport and ion transmembrane transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be part of chloride channel complex. Is expressed in hindbrain and spinal cord. Orthologous to human GLRA3 (glycine receptor alpha 3).

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0016594 glycine binding molecular_function
GO:0016933 extracellularly glycine-gated ion channel activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-020402-1 Enables extracellularly glycine-gated ion channel activity. Predicted to act upstream of or within chloride transport and ion transmembrane transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be part of chloride channel complex. Is expressed in hindbrain and spinal cord. Orthologous to human GLRA3 (glycine receptor alpha 3).

Ensembl:

ensembl_id ENSDARG00000011066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002248 True 3767 mRNA 0.41 9 38416106 38538284

Neighbor

gene id symbol gene type direction distance location
XLOC_001368 hpgd coding downstream 948 38398696 ~ 38415158 (-)
XLOC_001367 fbxo8 coding downstream 54610 38346043 ~ 38361496 (-)
XLOC_001366 hand2 coding downstream 221094 38193147 ~ 38195012 (-)
XLOC_001365 NA coding downstream 225902 38175862 ~ 38190204 (-)
XLOC_001364 hmgb2a coding downstream 244319 38169512 ~ 38171787 (-)
XLOC_001370 gpm6ab coding upstream 110857 38649141 ~ 38756904 (-)
XLOC_001371 asb5b coding upstream 266677 38804961 ~ 38816685 (-)
XLOC_001372 vegfc coding upstream 312546 38850830 ~ 38908197 (-)
XLOC_001373 dre-mir-2197 coding upstream 835518 39373802 ~ 39373911 (-)
XLOC_001374 BX324137.1 coding upstream 1137422 39675706 ~ 39677920 (-)
XLOC_001360 FP102961.1 non-coding downstream 1052116 37363872 ~ 37363990 (-)
XLOC_001357 NA non-coding downstream 1943284 36424768 ~ 36472822 (-)
XLOC_001356 NA non-coding downstream 2059640 36355781 ~ 36356466 (-)
XLOC_001355 NA non-coding downstream 2064618 36348693 ~ 36351488 (-)
XLOC_001375 NA non-coding upstream 1239365 39777649 ~ 39780017 (-)
XLOC_001380 CR847546.1 non-coding upstream 1447621 39985905 ~ 39986160 (-)
XLOC_001385 NA non-coding upstream 1617737 40156021 ~ 40156865 (-)

Expression


Co-expression Network