tubgcp5 (tubgcp5)


Basic Information

Item Value
gene id tubgcp5
gene name tubgcp5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1089396 ~ 1133908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978058.1
ACCATAGGACAGTGACGTCATCGTTAGCGTTGCTAGTAGTCGAGAAGTTGTTGCATGAAGATAGCTAGCTATGATAATAAACATTAACGGCTGAAACAAATTCATTCATTGCAACGTCTTCTGATGCAGAAATAATGCATGCGATTTAATTTCTCTAGTTTAGTATCATAACTTCAAGGGACGTGTCTTTAGGCCTTTACTCGTTGCTAACgcgtagctagctagctcccaCTGTTTCCACATAATGAATTTCAACGCAACGGCCAGCTAATAAGCTGGCATGCTAATTGAAAAATATTTAGCTGGCACTATCCGACGATACAGCATCAAGAGTCCAGCTATCAATAAATGCAGTTTCTTCGTTGGTGAATTTTACAGCACAGTGAATGTATTAGCTTGCTAACGCTAGTCAAATTGGTCACAATAATGTCACAGGCGCACTGGACCAAATTCGAAAAGGAGACCGAGGAAGAGGTGAAGAACCTGGTCAAGCACATCAGTGGGATTCAAGATGAAGAAGAGCAGAACTTTCAACTGGCACTGAAATTTACCTGGTCCAATTTCAGGTTTCACCGTTTCCTAGATGCCAATAGTCATAAAGTTCAACGCAGTGTGAATGGGATCTATGAGAAACTGATGGTGCATTCAGACCTGAGTAAAGCAGAGAGCTGGGTCAGACTGACAGAAGAGTTCCTCAACTCACCTCTACCCAACACAGATGGAACTAAGACTGACGTTCATCACAGTCTCCTGGACCTTCTCCTACACCTCTCCGACTCTCCCCTTAACTCCAACTACAGCGAGACACCCAGACTGAAGGAGACTGAGAAAGAAGACGACTTTGACTGGTGTGGATATTTAAAGGAAGGAGAGCTAGACACAGATCCATATCCAGACACCCCAGAGTGGTCTGAGGAGGAAAGCGAGGACGAGGACAGTCAGCAGCCGCTCAGCAGAGAGGATTCTGGGATACAGGTGGACCGTACCCCCCAGGAGGACCAGGAGAAGACGGTCCCTGTTACCTGGACAGTGGGTGAGCCTGATGCCAGGTCCTGGTTAGAGCAACATGTGGTTACTCCGTACTGGCAGGGCCACACTCCCCGCTTCCCTCACAGTCTCCATCTACACTCCAACCTGCTCAACGTCTGgGACCAACACGTGTACAACACTGACCCATTGTATCTGCCTGAAGAGAAAGCCTTTGTCACCGAGACGCAAGTGATCCGGGAGACATTGTGGCTGCTCTCTGGGGTGAAGAAACACTTTATATTCCAGCATCAGGATGGAAAAGTGGTGGTCAGGAATGATGTGGTGGTCACTCACCTGACTAACAACTGCCTACGGTCCGTGTTGGAGCACATAGCAGTCTATGGCCAGGCAGTGTTCCGGCTGCAGAGGTTTATAGACGAGGTAACGGGGTACGACACTGAGCCCTGCCCTCCAGGCTCCTACTCCTCTAAGCAGGGCACCGAGCCTCCCTTCAGGACTTACCAGGCTTTTGTCTGGGCTCTCTACAAATACTTCACCTCCTTCAAACAGGAGCTCACCACCATAGAAAGAGACCTCATAGGCAAAGATGAGACGGTGACCCTGGCGGGGGTGCTGGACAGACTGACCCCTCACCTGGCCCAGATCAAGGTGCTCCACAAGGTGTTCTGTACGGGTGTGGCAGAGGTCCCCCCTGAGACCCCTAACGTGGTGCGGGCCTCACACCTGCTCAACACACTGTACAAGGCTATCATAGAGTACGACAGCGTGGGAGAGGCATCCCAACAGGCCgtggctctgttattctctctgtggacagagacagtcagaccaTACCTAGAGATCGTGGATGAATGGATCGTTCATGGTCACCTGTTTGACCCCGCTAAAGAGTTCATCATTCAGAGGAACAAAGACGTACCAGTGAATCACAGAGACTTTTGGTACGCCACCTACACCTTGTACAGTATCTCCGAGACGGTGGAGAGCGAGGACAAGCTGAGTGACGCGGCCAGCGGGAGCAGCGCAGGGGAACAGGGATCGAAGTCTCAGCTCACCATGGTCTCCTTCCTCAAGCCGGTCCTCAAACAGATCATCATGGCTGGGAAGAGCATGCAGCTCCTCAAGAACCTGGACTGTAAAGAGGCTGAGCAGACCGATGGCTCCACTAGAGATGCAGAAAGGAAGAGCTTGTACACTCTTTTTCTGGAGTCTGTTCAGTCCCGCCTCCGTTGCCGGGACGACTCCCCCGTGGATACGGTCACCGAGCAACAGGCCACTAAGCAGAGCCTGATCAAGATGCAGTCGATTGTAGCtcagcatctacagatggatgaCATACATGACCCTCTACTGGCCATCAACTTCGCCAGgctGTACCTGGAGCAGAGTGACTTCCACGAGAGGTTCTCAGGCGGTGACGTGATCGTGGACCGTTCGTCTGAGTCGGTGACGTGTCAGACATTTGAGCTGACGCTGCGCTCCTGCCTCTACCCACACATCCAGAAGAGATACATTGAGTGCTGTGGCAACCTCATGACCACCCTGAAGAAGGACTACAGACTGCTGGAGTACCTTCAGGCCATGAGGAACTACTTCCTGTTGGAGGCAGGAGACACCATGTATGACTTCTATACAGCCATCTTTGATAAGGTCCTGGAGAAGGAGAGCTGGCAGCAACTGGCGTTCCTCAACGTTCAACTGCAGGAAGCTGTGGGACAGCGGTGTCCAGAGGACAGCAGCAGGTTGTCCATCTTCCTGGAGACGATAGATCCAGTCAGAAAGAAACAGCCAATTAATAATCTGGATGGTTTGACCCTCAGTTACAAGGTGCCCTGGCCTGTTGACATTGTGGTCAGCTCAGAGTGTCAGAGGATCTACAACCAGgtgttcctgctgctgctgcagatCAAATGGGCCAAATACAGTCTGGACACGCTGGCATTCAGTGATTTGACAGTAGCAGCTAAGCGGTTGGAAGGGACCCCGGAGGAGGTGAAGGCTAAAGAGCCAATCAACCAGCAGATCCACAGGATGTTTCTGCTTAGGGTCAAACTGATGCACTTCGTCAACAGCCTCCACAACTACATTGTGACCAGGATTCTTCACAGCACTGGACTGGAGTTCCAGCACCAAGTCCAGGAGGCTAAAGACCTGGACCAGCTGATTAAGATCCACTACAGATACCTGTCCACTATCCACGACCGTTGTCTATTGCGAGAGAAGGTGAGCTTTGTGAAGGAGGCGATCATGAAGGTTCTCAATCTGGTCCTCATCTTCTCAGACCGCTGGCAGGTTGGCTTTGGAGCGTGGAAGATCGAATCCATTGATAAGATGGAATCTGATTTCAAGAACTGTCACATGTTCCTGGTGACTATACTGAACAAAGCTGTCTGCCGCGGGTCATTTCCACACTTGGAGTCCCTTGCCCTGTCTCTGATGGCTGGCTTTGAACAGTGCTGAGAGAAGAACATCTCTTTCTGCTCGCCCACCAGACCCTTCGCTCCCCCCGAccaccagacccccccccccaaatggcaTCCTCTTCCCTTCAAAGTGCACTAGTTTTGgccctatagggaatagagtggcatttgggatgcatacactTTAGTTGTGACTGTTGTTGTTCTGACTTCATAGCACACAAGACTGGTGAATAAGGATGTCACACTCTCCCCGTTGCTAGTGGAGAAACAGAGCGTGTGTGAAGGGTCTATCCCTTCTCCTAAATCATGGATGCTCCTCCTCAATGCCCTCAAGACAATCCAGAGTCTCAGAAGTATTACAGATGTGTGACTGCTTGTAAATATTGTTGATTTTGAAGCTGTTTTATGGTGTTGTCATCCATATGTAGGCTTCCTGCACAATCCtgctgtttagtgttttacaacTACGGATTTACATTTGTTTGGGTTTTATTGGATTTTGATTTCTGGTGAGATTATTTTTGAATTGTTTTGCATTTGTATATTTGTTAATTGAACTACTGTCAATCCAGAATATCATAATAATGCATGTTTAAATCTCTCTCGTATCTCCCTGGTGTTAGTTTAGTTCATTGAAATGTACGGATAATAAACATTAACTAAATATTCAATCAAA

Function

symbol description
tubgcp5 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP5 (tubulin gamma complex associated protein 5).

NR:

description
LOW QUALITY PROTEIN: gamma-tubulin complex component 5

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978058.1 True 4092 mRNA 0.49 23 1089396 1133908

Neighbor

gene id symbol gene type direction distance location
slc9a7 slc9a7 coding upstream 117287 781840 ~ 1244153 (+)
nit2 nit2 coding upstream 471801 602103 ~ 617595 (+)
tbc1d23 tbc1d23 coding upstream 592268 439965 ~ 497128 (+)
LOC110532027 tomm70 coding upstream 668163 384207 ~ 421233 (+)
cyfip1 LOC106590724 coding downstream 39803 1173711 ~ 1300624 (+)
LOC118964682 NA coding downstream 193414 1327322 ~ 1328266 (+)
gabrb3 LOC107673538 coding downstream 200189 1334097 ~ 1398380 (+)
atp10a atp10a coding downstream 326159 1460067 ~ 1596619 (+)
LOC110520782 LOC106574119 coding downstream 598881 1732789 ~ 1770434 (+)
G571 yo84 non-coding upstream 44142 988089 ~ 1045254 (+)
G583 NA non-coding upstream 79189 1003783 ~ 1010207 (+)
G562 NA non-coding upstream 121179 967804 ~ 968217 (+)
G551 NA non-coding upstream 147851 941299 ~ 941545 (+)
G545 NA non-coding upstream 148703 887311 ~ 940693 (+)
G663 NA non-coding downstream 91186 1225094 ~ 1225527 (+)
G669 NA non-coding downstream 110449 1244357 ~ 1245764 (+)
G674 NA non-coding downstream 119106 1253014 ~ 1254747 (+)
G678 NA non-coding downstream 133444 1267352 ~ 1268360 (+)
G679 NA non-coding downstream 133488 1267396 ~ 1268081 (+)
G166 NA other upstream 769422 318047 ~ 319974 (+)
G51 NA other upstream 959133 120466 ~ 130263 (+)
G50 NA other upstream 969089 112959 ~ 120307 (+)
G26 NA other upstream 995678 56555 ~ 93718 (+)
G961 NA other downstream 944990 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 1124975 2258883 ~ 2305334 (+)
G2016 NA other downstream 1510427 2644335 ~ 2645169 (+)
G2343 NA other downstream 2080789 3214697 ~ 3216234 (+)
G2464 NA other downstream 2369361 3503269 ~ 3503581 (+)

Expression


Co-expression Network