LOC110524454 (rfc4)


Basic Information

Item Value
gene id LOC110524454
gene name rfc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69744586 ~ 69751448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604098.2
AAGAGCCATGCAGGCGTTTTTGAAAGGAACATCAACTCAAGCCACCAGACCTCTGAAAGAGAAAGGTACAGGGACCAGTGGAGAGAAGAAGCAGAAATCTGTCCCCTGGGTAGAGAAATAACCAAAATGTATGGAAGACGTGGTGTTTCAAGAGGAGGTGGTTGCTGTGCTGAAGAAGACTATAGAGGGCGCTGATCTCCCCAATCTGCTGTTCTATGGACCACCTGGAACAGGAAAGACCTCCACCATCCTGGCTGCAGCCAGGGAACTTTATGGGCCAGAGCTGTACCGACAGAGAGTGCTGGAGCTGAACGCCTCCGATGAGAGAGGGATTCAGGTGGTGAGAGAGAAAGTCAAGAGATTTGCCCAGCTGACTGTAGCAGGCCACCGCACTGATGGGAAACCATGCCCACCCTTTAAGATCATCATCCTGGATGAGGCTGACTCAATGACCAATGCTGCTCAGGCTGCTCTCAGACGAACCATGGAGAAGGAGTCCCGGACCACCCGCTTCTGTCTCATCTGCAACTACGTCAGCAGGATTATTGAGCCCTTGACATCCAGATGCTCCAAATTCCGCTTCAAACCTCTAGCAAATCAGGTCCAAGAAGAGCGCCTGCTGGATATCTGTGACAAGGAGAATCTCAAGTACTCAAAGGAGGGTATTGCAGCGTTGGTGAAGGTTTCAGAAGGGGATCTTAGAAAAGCCATAACCTTTCTTCAAAGTGCTGCACGGCTGAACACAGATAATGAGATCACGGAGAGTGCGGTCATAGAGATAGCTGGGGTTGTTCCTCCCAAGATGATTGACAATTTGCTCAAAATCTGTTACAAGGGAACATTTGAAAAACTAGAGATTGCTGTTCGGAACATGGTAGATGAGGGCTATGCTGCCACACAGATCATCAACCAGCTACACGAAGCCATCATAGAGGAAGAGCTGAATGACAAGCAGAAGTCTGCCATCACAGAAAAGATGGCAGTGGTCGACAAGTGTTTAGTGGATGGTGCAGATGAGTACCTGCAGATGCTGAGTATGTGTTCTGTGATCATGCAGCAAGCCACTCTGAGTAACTGACTCCACAACCTCATGGATCATTCCTCTCCATATGCATATAGACCAACAGCTTTTTCTATACATTTTTGTAGGTTGACTGTATTAAAATGTCAATTGTTTCCTGTAAA
>XM_021604096.2
ttggctgtgttgtaaaaaaaatataaaaagaaaataaaaatgatttttgATCTTAATGTAATGTTAGGCATAATGTTAGCCGttcggttaaggttagggttacgtcTAGGGTCtgattttaagaagatacattttagaaataggcggggttttaGACATAATTCTAATTTTGTGGCcatggtaactagtgacaaccgtCAGGGCGGGAAATCAACCACACATGTCAACAGATTACACATTCCGAATGTCAACGCATTTTAACTAACTAGCTTCATATTCTTAATTATTTTAAACGGTGTAAGTTAACTTTAAAGTCTGGTTTCAATCAACTTTGGAAGAGCCATGCAGGCGTTTTTGAAAGGAACATCAACTCAAGCCACCAGACCTCTGAAAGAGAAAGGTACAGGGACCAGTGGAGAGAAGAAGCAGAAATCTGTCCCCTGGGTAGAGAAATATAGACCAAAATGTATGGAAGACGTGGTGTTTCAAGAGGAGGTGGTTGCTGTGCTGAAGAAGACTATAGAGGGCGCTGATCTCCCCAATCTGCTGTTCTATGGACCACCTGGAACAGGAAAGACCTCCACCATCCTGGCTGCAGCCAGGGAACTTTATGGGCCAGAGCTGTACCGACAGAGAGTGCTGGAGCTGAACGCCTCCGATGAGAGAGGGATTCAGGTGGTGAGAGAGAAAGTCAAGAGATTTGCCCAGCTGACTGTAGCAGGCCACCGCACTGATGGGAAACCATGCCCACCCTTTAAGATCATCATCCTGGATGAGGCTGACTCAATGACCAATGCTGCTCAGGCTGCTCTCAGACGAACCATGGAGAAGGAGTCCCGGACCACCCGCTTCTGTCTCATCTGCAACTACGTCAGCAGGATTATTGAGCCCTTGACATCCAGATGCTCCAAATTCCGCTTCAAACCTCTAGCAAATCAGGTCCAAGAAGAGCGCCTGCTGGATATCTGTGACAAGGAGAATCTCAAGTACTCAAAGGAGGGTATTGCAGCGTTGGTGAAGGTTTCAGAAGGGGATCTTAGAAAAGCCATAACCTTTCTTCAAAGTGCTGCACGGCTGAACACAGATAATGAGATCACGGAGAGTGCGGTCATAGAGATAGCTGGGGTTGTTCCTCCCAAGATGATTGACAATTTGCTCAAAATCTGTTACAAGGGAACATTTGAAAAACTAGAGATTGCTGTTCGGAACATGGTAGATGAGGGCTATGCTGCCACACAGATCATCAACCAGCTACACGAAGCCATCATAGAGGAAGAGCTGAATGACAAGCAGAAGTCTGCCATCACAGAAAAGATGGCAGTGGTCGACAAGTGTTTAGTGGATGGTGCAGATGAGTACCTGCAGATGCTGAGTATGTGTTCTGTGATCATGCAGCAAGCCACTCTGAGTAACTGACTCCACAACCTCATGGATCATTCCTCTCCATATGCATATAGACCAACAGCTTTTTCTATACATTTTTGTAGGTTGACTGTATTAAAATGTCAATTGTTTCCTGTAAA
>XM_021604097.2
cattggctgtgttgtaaaaaaaatataaaaagaaaataaaaatgatttttgATCTTAATGTAATGTTAGGCATAATGTTAGCCGttcggttaaggttagggttacgtcTAGGGTCtgattttaagaagatacattttagaaataggcggggttttaGACATAATTCTAATTTTGTGGCcatggtaactagtgacaaccgtCAGGGCGGGAAATCAACCACACATGTCAACAGATTACACATTCCGAATGTCAACGCATTTTAACTAACTAGCTTCATATTCTTAATTATTTTAAACGGTGTAAGTTAACTTTAAAGTCTGGTTTCAATCAACTTTGGAGCCATGCAGGCGTTTTTGAAAGGAACATCAACTCAAGCCACCAGACCTCTGAAAGAGAAAGGTACAGGGACCAGTGGAGAGAAGAAGCAGAAATCTGTCCCCTGGGTAGAGAAATATAGACCAAAATGTATGGAAGACGTGGTGTTTCAAGAGGAGGTGGTTGCTGTGCTGAAGAAGACTATAGAGGGCGCTGATCTCCCCAATCTGCTGTTCTATGGACCACCTGGAACAGGAAAGACCTCCACCATCCTGGCTGCAGCCAGGGAACTTTATGGGCCAGAGCTGTACCGACAGAGAGTGCTGGAGCTGAACGCCTCCGATGAGAGAGGGATTCAGGTGGTGAGAGAGAAAGTCAAGAGATTTGCCCAGCTGACTGTAGCAGGCCACCGCACTGATGGGAAACCATGCCCACCCTTTAAGATCATCATCCTGGATGAGGCTGACTCAATGACCAATGCTGCTCAGGCTGCTCTCAGACGAACCATGGAGAAGGAGTCCCGGACCACCCGCTTCTGTCTCATCTGCAACTACGTCAGCAGGATTATTGAGCCCTTGACATCCAGATGCTCCAAATTCCGCTTCAAACCTCTAGCAAATCAGGTCCAAGAAGAGCGCCTGCTGGATATCTGTGACAAGGAGAATCTCAAGTACTCAAAGGAGGGTATTGCAGCGTTGGTGAAGGTTTCAGAAGGGGATCTTAGAAAAGCCATAACCTTTCTTCAAAGTGCTGCACGGCTGAACACAGATAATGAGATCACGGAGAGTGCGGTCATAGAGATAGCTGGGGTTGTTCCTCCCAAGATGATTGACAATTTGCTCAAAATCTGTTACAAGGGAACATTTGAAAAACTAGAGATTGCTGTTCGGAACATGGTAGATGAGGGCTATGCTGCCACACAGATCATCAACCAGCTACACGAAGCCATCATAGAGGAAGAGCTGAATGACAAGCAGAAGTCTGCCATCACAGAAAAGATGGCAGTGGTCGACAAGTGTTTAGTGGATGGTGCAGATGAGTACCTGCAGATGCTGAGTATGTGTTCTGTGATCATGCAGCAAGCCACTCTGAGTAACTGACTCCACAACCTCATGGATCATTCCTCTCCATATGCATATAGACCAACAGCTTTTTCTATACATTTTTGTAGGTTGACTGTATTAAAATGTCAATTGTTTCCTGTAAA

Function

symbol description
rfc4 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

NR:

description
replication factor C subunit 4-like isoform X1

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604098.2 False 1185 mRNA 0.48 10 69744586 69750880
XM_021604096.2 False 1523 mRNA 0.45 11 69744586 69751446
XM_021604097.2 True 1522 mRNA 0.45 11 69744586 69751448

Neighbor

gene id symbol gene type direction distance location
LOC110524451 LOC106613917 coding downstream 1232 69738363 ~ 69743354 (-)
LOC110524450 k0841 coding downstream 16160 69715282 ~ 69728426 (-)
LOC110524449 LOC106613916 coding downstream 30256 69704871 ~ 69714330 (-)
LOC110524447 LOC106613914 coding downstream 125511 69551803 ~ 69619075 (-)
LOC110524442 LOC106613910 coding downstream 394035 69239531 ~ 69350551 (-)
LOC110524457 LOC106584309 coding upstream 73862 69825310 ~ 69834151 (-)
LOC110522884 LOC106604339 coding upstream 168709 69920157 ~ 69921094 (-)
LOC110524459 spata16 coding upstream 198756 69950204 ~ 70004717 (-)
LOC110524463 tbl1xr1 coding upstream 1085367 70836815 ~ 70870397 (-)
LOC110524467 zmat3 coding upstream 1270224 71021672 ~ 71033577 (-)
G433820 NA non-coding downstream 7177 69736944 ~ 69737409 (-)
G433818 NA non-coding downstream 11421 69732955 ~ 69733165 (-)
G433814 NA non-coding downstream 14794 69729555 ~ 69729792 (-)
G433735 NA non-coding downstream 41295 69656009 ~ 69703291 (-)
G433725 NA non-coding downstream 188095 69555019 ~ 69556491 (-)
G433889 NA non-coding upstream 115885 69867333 ~ 69886159 (-)
G433918 ect2 non-coding upstream 146481 69897929 ~ 69899326 (-)
G433938 NA non-coding upstream 173213 69924661 ~ 69924861 (-)
G433940 NA non-coding upstream 175696 69927144 ~ 69991777 (-)
G433950 NA non-coding upstream 188146 69939594 ~ 69965405 (-)
G433683 LOC106613912 other downstream 219796 69486406 ~ 69524790 (-)
G432513 NA other downstream 738480 69004619 ~ 69006106 (-)
G432338 NA other downstream 989529 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 1037138 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 1391841 68331871 ~ 68352828 (-)
G435234 NA other upstream 1239444 70990892 ~ 70991798 (-)
G435176 NA other upstream 1316577 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 1477734 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 1534942 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 2289514 72040962 ~ 72121697 (-)

Expression


Co-expression Network