XLOC_030969


Basic Information

Item Value
gene id XLOC_030969
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20416722 ~ 20420371 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061977
agttcagtttattttttattttcctggTAATCAGTAAGACTCTTTATAACTGAAGCAGATGAATGAACAAAAGTGGAACAGTTATGCACAAAACTCCTTCCTTTTCCATTGTATCAACGAAAGCTTTAAATGCTCTCAGTATGCATCATGATGAGGGAAATGGGTTCTTTAAAATCAGCAAATTCCAAAATGGGACAAACACCTTCCTATAGgcaaagaaaaaaggaaaactaaaacaaaagacGGCATATTTACAACGAATCAAAATAAATCCAGCCTTATTCCTGCATTATCTTTTCAACCTACAAAAAACCCTTGTCACTTCATTCGCTCCTCTGAAAGCACACACTCGAGGCCTCCTGAGGCCAAGGATCCATCACACGTCCTAAAGATGATCCAGCTTGGCACATCTGTACCCATAAATACAACCCCTACATAGTCAAACCCTTCACTTTAAAACTGCACCAAAAACAAttgaaagagagacagagagagagagagagagagagagagagagaatgagaggtaTTGAGTTTTTGCTGTCGATGAAGCCTTCCCtgcttttctttcttaaatattttgtcttgttttagtcaaaatatctacaaattcttaaatctagaagcatttctagacaagtaaaaataccAAAAGCTAAAATTTTGGAACATACCTtggaatttttttgttgttgctctgAGCTTATATTAGGATGAGAAACTAAAGACATTTTAGAGGTATGCGGTGAGACCTGTAGGTTTCtggattcatttaaaaaaaaAAAAGTGCAGATGTGTCAATATGGATTAGTAGGGGAAAAGCTGACTCTTTTTTTTGCCAGCAAGTGTCTGAGGCTGTAGGAAAAGCACACATTGGCTTTAAACTAgaattactttaaattatttgGCCTATTAATATCTTTAAATGTGGGTTCATGCACAGTGAGACATTTGTATGATTTTCCAGTACAGTTTTGTAAACGTTTTCGACTCTACATGTTTGCCGGCTtgattaaaatctttatttttattctctAGAAAGACAGCTAtaacatttgaaaacaaaatccAGTGATTTCCCCTCCTTGCATATTGCTTTG
>TCONS_00061978
ccAAACCAAGTGTAtcatataaacaaacacatattgtTACATTCCTTCATGAATTGCTAAATACTGCTTGCTGTGCGTGGACACAGTCTCAATTGGGTCTCAGAgcctggcaggtctgccttgcctttggaaaacgcatgctctcatgaataattaagaaacaGAGTCTTcccataggataagaaaactgcgctatgaataataatgagaaaccgatgcgttatcactccactagcagattcgcgATATGTCACCAATTTTTATCCtgccccaaaaatgattttaaactcgAAAGATGAAATGAGCTGACAAAAgatcaaaattatccagtttctcCACAATTAGAGCTGACAGCTGCTAACGTTgtcctaactgatgctcaacactcaaaaaagtactccagggtgtcttgaacctttaaggaTGAGTAATTAGCGAGTAAATCTTCATTTGttttggtgaactgtctctttaatagttGGGGAGCAAAAACGAGAGAGACAAGTGCCAAtagttcagtttattttttattttcctggTAATCAGTAAGACTCTTTATAACTGAAGCAGATGAATGAACAAAAGTGGAACAGTTATGCACAAAACTCCTTCCTTTTCCATTGTATCAACGAAAGCTTTAAATGCTCTCAGTATGCATCATGATGAGGGAAATGGGTTCTTTAAAATCAGCAAATTCCAAAATGGGACAAACACCTTCCTATAGgcaaagaaaaaaggaaaactaaaacaaaagacGGCATATTTACAACGAATCAAAATAAATCCAGCCTTATTCCTGCATTATCTTTTCAACCTACAAAAAACCCTTGTCACTTCATTCGCTCCTCTGAAAGCACACACTCGAGGCCTCCTGAGGCCAAGGATCCATCACACGTCCTAAAGATGATCCAGCTTGGCACATCTGTACCCATAAATACAACCCCTACATAGTCAAACCCTTCACTTTAAAACTGCACCAAAAACAAttgaaagagagacagagagagagagagagagagagagagagagaatgagaggtaTTGAGTTTTTGCTGTCGATGAAGCCTTCCCtgcttttctttcttaaatattttgtcttgttttagtcaaaatatctacaaattcttaaatctagaagcatttctagacaagtaaaaataccAAAAGCTAAAATTTTGGAACATACCTtggaatttttttgttgttgctctgAGCTTATATTAGGATGAGAAACTAAAGACATTTTAGAGGTATGTGGTGAGACCTGAAGGTTTCTGGATTCATTCAAGAAACAGAAGAAAAGTGCAGATGTGTCAATATGGATTAGTAGGGGAAAAGCTGACTCTTTTTTTTGCCAGCAAGTGTCTGAGGCTGTAGGAAAAGCACACATTGGCTTTAAACTAgaattactttaaattatttgGCCTATTAATATCTTTAAATGTGGGTTCATGCACAGTGAGACATTTGTATGATTTTCCAGTACAGTTTTGTAAACGTTTTCGACTCTACATGTTTGCCGGCTtgattaaaatctttatttttattctctAGAAAGACAGCTAtaacatttgaaaacaaaatccAGTGATTTCCCCTCCTTGCATATTGCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061977 False 1099 lncRNA 0.36 2 20416722 20419859
TCONS_00061978 True 1615 lncRNA 0.37 2 20416722 20420371

Neighbor

gene id symbol gene type direction distance location
XLOC_030968 AL845326.1 coding downstream 7770 20408836 ~ 20408952 (-)
XLOC_030967 NA coding downstream 119283 20289359 ~ 20297439 (-)
XLOC_030966 dao.3 coding downstream 211647 20197138 ~ 20205075 (-)
XLOC_030965 dao.1 coding downstream 221372 20188438 ~ 20195350 (-)
XLOC_030964 dao.2 coding downstream 231057 20170960 ~ 20185665 (-)
XLOC_030970 ISCU coding upstream 23517 20443888 ~ 20446082 (-)
XLOC_030971 ficd coding upstream 65253 20485624 ~ 20491272 (-)
XLOC_030972 NA coding upstream 180016 20600387 ~ 20614620 (-)
XLOC_030973 NA coding upstream 195700 20616071 ~ 20619339 (-)
XLOC_030974 wscd2 coding upstream 206829 20627200 ~ 20678300 (-)
XLOC_030961 NA non-coding downstream 307457 20105008 ~ 20109265 (-)
XLOC_030959 NA non-coding downstream 453166 19960680 ~ 19963556 (-)
XLOC_030952 NA non-coding downstream 1080195 19334206 ~ 19336527 (-)
XLOC_030981 NA non-coding upstream 818962 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 non-coding upstream 872759 21293130 ~ 21293245 (-)
XLOC_030984 NA non-coding upstream 1188987 21609358 ~ 21852227 (-)

Expression


Co-expression Network