Fish Transcriptome and Expression Database

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model fish

XLOC_036972 (AL954142.3)

Basic Information

Item	Value
gene id	XLOC_036972
gene name	AL954142.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	9377863 ~ 9377978 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072789
ggccaCAGCCGTATCACCCTGccgcccaagaccggttactcactgaagctaagcagggctgagcctggttattacctggatgggagaccactagggaacagtagtttctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108052

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00072789	True	116	rRNA	0.55	1	9377863	9377978

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_036970	si:ch211-214p13.8	coding	upstream	74504	9295428 ~ 9303359 (+)
XLOC_036969	sik1	coding	upstream	255301	9112159 ~ 9122562 (+)
XLOC_036968	ube2al	coding	upstream	405100	8968702 ~ 8972763 (+)
XLOC_036967	ankrd10b	coding	upstream	409927	8929764 ~ 8967936 (+)
XLOC_036966	naxd	coding	upstream	454392	8894788 ~ 8923471 (+)
XLOC_036973	maats1	coding	downstream	63475	9441453 ~ 9501931 (+)
XLOC_036974	nr1i2	coding	downstream	124632	9502610 ~ 9562644 (+)
XLOC_036975	si:ch1073-394i4.1	coding	downstream	480957	9858935 ~ 9866531 (+)
XLOC_036976	NA	coding	downstream	515128	9893106 ~ 9896957 (+)
XLOC_036977	ttf2	coding	downstream	549538	9927516 ~ 9950487 (+)
XLOC_036965	NA	non-coding	upstream	492042	8884235 ~ 8885821 (+)
XLOC_036963	NA	non-coding	upstream	646498	8730515 ~ 8731365 (+)
XLOC_036962	NA	non-coding	upstream	682649	8693993 ~ 8695214 (+)
XLOC_036954	NA	non-coding	upstream	1023796	8353798 ~ 8354067 (+)
XLOC_036953	NA	non-coding	upstream	1214011	8160458 ~ 8163852 (+)
XLOC_036979	NA	non-coding	downstream	778000	10155978 ~ 10157547 (+)
XLOC_036980	BX936345.1	non-coding	downstream	965886	10343864 ~ 10343980 (+)
XLOC_036982	NA	non-coding	downstream	1184660	10562638 ~ 10564946 (+)
XLOC_036985	NA	non-coding	downstream	1359108	10737086 ~ 10760113 (+)

Expression

Co-expression Network