trnae-uuc-61


Basic Information

Item Value
gene id trnae-uuc-61
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 41304115 ~ 41304186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnae-uuc-61
tcccatatggtctagcggttaggattcctggttttcacccaggcgGCCCGGGTTCGACTCCCGGTATGGGAA

Function

NR:

description
uncharacterized protein LOC110437899

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-uuc-61 True 72 mRNA 0.58 1 41304115 41304186

Neighbor

gene id symbol gene type direction distance location
LOC110505185 nkrf coding upstream 19309 41279670 ~ 41284806 (+)
LOC110505183 LOC106611514 coding upstream 29954 41245345 ~ 41274161 (+)
LOC100136046 NA coding upstream 39567 41232565 ~ 41264548 (+)
LOC118946090 NA coding upstream 70821 41233205 ~ 41233294 (+)
LOC110505181 LOC106611515 coding upstream 71752 41227590 ~ 41232363 (+)
LOC110505187 LOC105025400 coding downstream 260 41304446 ~ 41384932 (+)
LOC110505190 LOC106611509 coding downstream 586304 41890490 ~ 41967303 (+)
LOC110505193 LOC106611505 coding downstream 1861741 43165927 ~ 43276961 (+)
LOC110505194 timm8a coding downstream 2056823 43361009 ~ 43362440 (+)
LOC110505198 NA coding downstream 2359229 43663415 ~ 43669237 (+)
G2283323 NA non-coding upstream 78938 41224882 ~ 41225177 (+)
G2283260 NA non-coding upstream 197337 41106302 ~ 41106778 (+)
G2283256 NA non-coding upstream 199423 41104253 ~ 41104692 (+)
G2283252 LOC100136012 non-coding upstream 200794 41102242 ~ 41103321 (+)
G2283328 NA non-coding downstream 81806 41385992 ~ 41386785 (+)
G2284089 NA non-coding downstream 534669 41838855 ~ 41839078 (+)
G2284090 NA non-coding downstream 535279 41839465 ~ 41839712 (+)
G2284114 NA non-coding downstream 569083 41873269 ~ 41873592 (+)
G2284115 NA non-coding downstream 570571 41874757 ~ 41875038 (+)
G2282300 NA other upstream 1060393 40243421 ~ 40243722 (+)
nudt6 nudt6 other upstream 6365300 34923553 ~ 34939399 (+)
G2274048 NA other upstream 7071511 34231995 ~ 34232604 (+)
LOC110505080 LOC106611630 other upstream 7096700 34202011 ~ 34207415 (+)
LOC110505056 LOC105028844 other upstream 7882430 33328263 ~ 33421963 (+)
G2286532 NA other downstream 2248045 43552231 ~ 43552920 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G246597 NA non-coding CI01000057 null 4532796 ~ 4534368 (-)
eurasian perch (Perca fluviatilis) trnae-uuc_66 NA coding NC_053135.1 CM020932.1 12985817 ~ 12985888 (-)
striped catfish (Pangasianodon hypophthalmus) trnae-uuc_18 NA coding NC_047613.1 CM018559.1 21210182 ~ 21210253 (-)
tiger barb (Puntius tetrazona) trnac-gca_94 NA coding NC_056709.1 CM032078.1 1152861 ~ 1152931 (-)
mexican tetra (Astyanax mexicanus) trnae-uuc_18 NA misc NC_035911.1 CM008314.1 24810929 ~ 24811000 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_29 NA misc NW_019172086.1 APWO02001684.1 9563 ~ 9634 (+)