RNA id: trnae-uuc-61


Basic Information

Item Value
RNA id trnae-uuc-61
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnae-uuc-61
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 41304115 ~ 41304186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccatatggtctagcggttaggattcctggttttcacccaggcgGCCCGGGTTCGACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2611076 lncRNA upstream 68843 41232565 ~ 41235272 (+) True LOC100136046
TU2611072 lncRNA upstream 78938 41224882 ~ 41225177 (+) True G2283323
TU2611004 lncRNA upstream 197337 41106302 ~ 41106778 (+) True G2283260
TU2611000 lncRNA upstream 199423 41104253 ~ 41104692 (+) True G2283256
TU2610996 lncRNA upstream 200794 41102242 ~ 41103321 (+) True G2283252
TU2611079 lncRNA downstream 81806 41385992 ~ 41386785 (+) True G2283328
TU2611876 lncRNA downstream 534669 41838855 ~ 41839078 (+) True G2284089
TU2611877 lncRNA downstream 535279 41839465 ~ 41839712 (+) True G2284090
TU2611901 lncRNA downstream 569083 41873269 ~ 41873592 (+) True G2284114
TU2611902 lncRNA downstream 570571 41874757 ~ 41875038 (+) True G2284115
XM_021584221.2 mRNA upstream 19309 41279670 ~ 41284806 (+) False LOC110505185
XM_021584222.2 mRNA upstream 19309 41279670 ~ 41284806 (+) False LOC110505185
XM_021584220.2 mRNA upstream 19309 41280180 ~ 41284806 (+) False LOC110505185
XM_036969552.1 mRNA upstream 19309 41280184 ~ 41284806 (+) True LOC110505185
XM_021584217.2 mRNA upstream 29954 41248176 ~ 41274161 (+) False LOC110505183
XM_036969628.1 mRNA downstream 260 41304446 ~ 41384932 (+) False LOC110505187
XM_021584227.2 mRNA downstream 19972 41324158 ~ 41384932 (+) False LOC110505187
XM_036969627.1 mRNA downstream 19973 41324159 ~ 41384932 (+) True LOC110505187
XM_021584230.2 mRNA downstream 586304 41890490 ~ 41967303 (+) False LOC110505190
XM_021584231.2 mRNA downstream 586304 41890490 ~ 41967303 (+) False LOC110505190
TU2609940 other upstream 1060393 40243421 ~ 40243722 (+) True G2282300
TU2602435 other upstream 6365300 34923958 ~ 34938815 (+) False nudt6
TU2602437 other upstream 6365300 34937149 ~ 34938815 (+) True nudt6
TU2601139 other upstream 7071511 34231995 ~ 34232604 (+) True G2274048
TU2601118 other upstream 7096700 34202083 ~ 34207415 (+) True LOC110505080
TU2614430 other downstream 2248045 43552231 ~ 43552920 (+) True G2286532

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279869 True 1573 lncRNA 0.42 1 CI01000057 4532796 ~ 4534368 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1566 True 72 tRNA 0.58 1 NC_053135.1 12985817 ~ 12985888 (-)
striped catfish (Pangasianodon hypophthalmus) trnae-uuc_18 True 72 tRNA 0.58 1 NC_047613.1 21210182 ~ 21210253 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1566 True 71 tRNA 0.55 1 NC_056709.1 1152861 ~ 1152931 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2856 False 72 tRNA 0.58 1 NW_025048150.1 401934 ~ 402005 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_18 True 72 tRNA 0.58 1 NC_035911.1 24810929 ~ 24811000 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_29 True 72 tRNA 0.58 1 NW_019172086.1 9563 ~ 9634 (+)