RNA id: unassigned_transcript_1566


Basic Information

Item Value
RNA id unassigned_transcript_1566
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnae-uuc_66
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12985817 ~ 12985888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCaggcggcccgggttcgactcccgGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318280 lncRNA downstream 199874 12783991 ~ 12785943 (-) True G234375
TU318278 lncRNA downstream 205657 12779586 ~ 12780160 (-) True G234373
TU318234 lncRNA downstream 496809 12487905 ~ 12489008 (-) True G234333
TU318227 lncRNA downstream 498487 12436996 ~ 12487330 (-) True G234330
TU318222 lncRNA downstream 551074 12432847 ~ 12434743 (-) True G234328
TU318363 lncRNA upstream 2485 12988373 ~ 12991438 (-) True G234434
TU318408 lncRNA upstream 175844 13161732 ~ 13162096 (-) True G234478
TU318420 lncRNA upstream 214090 13199978 ~ 13200294 (-) True G234490
TU318421 lncRNA upstream 217034 13202922 ~ 13205960 (-) True G234491
TU318463 lncRNA upstream 445093 13430981 ~ 13439811 (-) True G234523
XM_039793136.1 mRNA downstream 1242 12961875 ~ 12984575 (-) True gk
XM_039793137.1 mRNA downstream 1243 12961875 ~ 12984574 (-) False gk
XM_039793818.1 mRNA downstream 26254 12954106 ~ 12959563 (-) True LOC120554795
XM_039793135.1 mRNA downstream 31602 12951421 ~ 12954215 (-) True LOC120554312
XM_039793523.1 mRNA downstream 100719 12797844 ~ 12885098 (-) True filip1l
XM_039792859.1 mRNA upstream 6950 12992838 ~ 12995995 (-) True mtrf1
XM_039792867.1 mRNA upstream 35160 13021048 ~ 13048596 (-) True zgc:65895
XM_039792868.1 mRNA upstream 35160 13021048 ~ 13029985 (-) False zgc:65895
XM_039792869.1 mRNA upstream 35160 13021048 ~ 13025544 (-) False zgc:65895
XM_039793522.1 mRNA upstream 720362 13706250 ~ 13711834 (-) True LOC120554566
TU318311 other downstream 31692 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 692674 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 1543891 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1938858 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 2016707 10967423 ~ 10969110 (-) True G233954
unassigned_transcript_1567 other upstream 70728 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 126270 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 1861946 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 1976473 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 1983634 14969522 ~ 15013814 (-) False LOC120554377

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279869 True 1573 lncRNA 0.42 1 CI01000057 4532796 ~ 4534368 (-)
rainbow trout (Oncorhynchus mykiss) trnae-uuc-61 True 72 mRNA 0.58 1 NC_050571.1 41304115 ~ 41304186 (+)
striped catfish (Pangasianodon hypophthalmus) trnae-uuc_18 True 72 tRNA 0.58 1 NC_047613.1 21210182 ~ 21210253 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2856 False 72 tRNA 0.58 1 NW_025048150.1 401934 ~ 402005 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_18 True 72 tRNA 0.58 1 NC_035911.1 24810929 ~ 24811000 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_29 True 72 tRNA 0.58 1 NW_019172086.1 9563 ~ 9634 (+)