RNA id: TU318421


Basic Information

Item Value
RNA id TU318421
length 3039
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G234491
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13202922 ~ 13205960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGTTCAGTGCTTTAATGTGCCAACGTACAAAGAGATAAATGCTTATTACTGACAGCTCTACAATGGCATCTAAAACATgccaacacacatgcacacacactcgttCTCTATTTGTCTAACACACTCTTCCTCTGTCAttcagacacacattcatacacacttCCTAAATCCCTATGCACATCATTAGACAGTGTTTCTCTCCAGTCTACTGGGAGATGAGGCATAAAACAGAGCTGTCTCTTGTTTGCGAGCCTCTACTTTTCATCAGTAAATTAATAACCAAACAAATGCTAAAATCTACGAGTCAGACTTGGGCTAAAACATACAAGGAACCAgcagtacatttcatttgtacagagagtctggccactgtccattgacaagtgttaacttccttgaaggcgggtactccgttgaagtttaaaatgattggatctgcccagagtcactctggatctgccataaccaatcgcttttcccgaaccccgtggggaagAGGGACATatcatcatggccaccaacacaactcagcaaagattgttcttgctcgggcttttggatattcggcagcgttgccacaacggaccgaatggcttcgctcgcatctttctccgccaccATTACAGAACTACAACTCTAGCGCAcggcctcaacgtcatcgttctcagcctgtctctctgttcACTGATTTGAGACAGGTTCGCCAAAAATttggctggagaaaacccaagactataccgCGAACCCAGAAAATTTAGCGTAAGTacataggagggcggagccaggctagggTCAGACACTATGGAATCAGAAATACCGTAACGTATATAACGTATTAATAACGTATTAAAGAATAGTTGTGTTTTTGTAGCAAGCTCATTTAGTTCCCCATATAAACTACACTGAGGTGCCTTACACAAATAATCGTATTTACCCAGAACCACATTGAAGTGCTTCATTAAAAATCAAAGCATGTAGGTCATTTTTTCGAAACTGGTGCAACCATATTTGCCTTGTCATTTAGAATCAGAGACTCATAATTAAAACTGACGTGACATTGATTTCAGCTCCTAATTAAAAAATCAAAACACAGCGACTTTAACTGCATCTGCTCGTTCCTGAAGGCAGCAGCTATGAGAAGTTAGGGTAGGTTTGTTTTATGTATGTAGTGTTGTCACATTGAATCTTGGATAAAATATGTACTAATAACAGCAGCTGTACAATGTTAAACTACCCGGCAAAATAAAGCTGTAAATCTTTGATCAGAAAGGGGATTTATCTCCTTTAgagtgtttatgtgtctgaCGGGTAAATTAAGAATAAGGGTGCTGTAACACCACGCTGTAAATCAACAACATTTTCAGTACGTTTCAGAGTTGCTGCAGACAAATATTTtgcacaaaacaaatacaaaccaatgttagttttttttagtttattatTGTCATTTAGTCCTTCCATTATAATAATGGATATTGGAAATGATTCATGTATATTTTAACCCAGATCTGTTGCAGTGTTAGTGCCTACGGCTCCTCTACACCACCAAAGCACAGAGACGTTTCTAGGTAGCAAAAACACCCTCACTAAGCTGTGATCATACAGTATTAAATACAGTAGCGGCCATATCAAATATCATACTGGTGGTAATTATCTCTATTACAGCACTTCCTCATTGTGTCAAGACTTCTGTCTAACTCTGTCAGCATGGAGTAAAAACACACAGGTGACACAAAGTGCTTCGTCCATGACCTGACAGAAAATCTGGTGAACCAACAAAGCTAAACACTGATTAACCAGAGCCCTACCACTGTACACGGTGAGCTGTGACATCTTTCAAACTGATAAATTACTAAAGAGTAGGGTCACATGCTTAAAAAAGCACCCGCTGACCCATATAGCTGGTATGACTAATGGAATAATGGCCGTAACACTGAGTGCTGTTTCTGCTTTTACTCAGGGCCAAATTAAAAGATGGGTAAACTGTGACATCCAGTCACTAAAAAAACCCACATAAAAGCATTGAAGGTCAGGATTTTTGTCCGCCTCAGAAGACTCTACTTTTATATAACATCAGTTCAATACTAACTTCCTAGAATATACACTGTGAATTTACAACATGACGTTTATATCAGCCTGAAATGGCTTGTAAAGTGAGATTAAGTGACTTTAGTCTCCACCACATCCTGCACACAAGTTTATTGTTTAGTAACGCTTTACATTGCAGCCTAAAAATTACAGTGTAAATATTTTGGACATGCAGGGTACCAATGACAATatgaatataataaaatatatgtgtTTAGGGGTTACCTACTATAGAAAGTGTTCTAGGTCTTTCTCCAACATCAGTTTGTTGACCATATAAATTCTACATTGGATCCCTAAACTATTACTCTTCTAGTATTTATTCATTACACTATATAGTGGTATACAGGTATATTGGTACACCTGTCTTCCTGGGCTTAAATTAATAGTGTTCTTTCCCAATGGCAACAATAATTGATTAAAAGAATAGTtggacatttttggaaatactcttttttgctttctttcccAGAGTTAgttcgataccactctcatgtctatGCCAACAGCTAGTTTGACTGTACGGATTAAACAATCAAAATGcggtaatgtttttattaatgaaCTTTCCAAGTGCTGGTAGGTAGATTTTGAAATTCGGACAGAACCAGGCTGTCTTTGTCCCAtttccagtcttcatgctaagctaagctaaccagttGATGACTGTAGTTTAATATTTAGTGTACAGATATGACAGTTGTATCAGTCTTAACAACTAACTCTTGAAAAGAAAgcacattttccaaactattcctttaaaggtgcagtaggtaagacttataaaaaggtgcagtaggtaagaattataaaactaactttctgtcatattttctgaaactgaccctatgctcaagtagaactacatgaagcaggtcatttagaaaaaaaagatcgggctcctctggcaccacctacagcctgtagtgcgatttgcaaaaatccacc

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318420 lncRNA downstream 2628 13199978 ~ 13200294 (-) True G234490
TU318408 lncRNA downstream 40826 13161732 ~ 13162096 (-) True G234478
TU318363 lncRNA downstream 211484 12988373 ~ 12991438 (-) True G234434
TU318280 lncRNA downstream 416979 12783991 ~ 12785943 (-) True G234375
TU318278 lncRNA downstream 422762 12779586 ~ 12780160 (-) True G234373
TU318463 lncRNA upstream 225021 13430981 ~ 13439811 (-) True G234523
TU318466 lncRNA upstream 281007 13486967 ~ 13497867 (-) True G234526
TU318467 lncRNA upstream 292128 13498088 ~ 13504486 (-) True G234527
TU318470 lncRNA upstream 295640 13501600 ~ 13502119 (-) False G234527
TU318537 lncRNA upstream 604424 13810384 ~ 13813184 (-) True G234586
XM_039792867.1 mRNA downstream 154326 13021048 ~ 13048596 (-) True zgc:65895
XM_039792868.1 mRNA downstream 172937 13021048 ~ 13029985 (-) False zgc:65895
XM_039792869.1 mRNA downstream 177378 13021048 ~ 13025544 (-) False zgc:65895
XM_039792859.1 mRNA downstream 206927 12992838 ~ 12995995 (-) True mtrf1
XM_039793136.1 mRNA downstream 218347 12961875 ~ 12984575 (-) True gk
XM_039793522.1 mRNA upstream 500290 13706250 ~ 13711834 (-) True LOC120554566
XM_039792539.1 mRNA upstream 591472 13797432 ~ 14008423 (-) True hecw2b
XM_039793062.1 mRNA upstream 774091 13980051 ~ 13981370 (-) True LOC120554288
XM_039793131.1 mRNA upstream 804305 14010265 ~ 14087482 (-) True gtf3c3
XM_039793273.1 mRNA upstream 995376 14201336 ~ 14290043 (-) False arhgap1
unassigned_transcript_1568 other downstream 90694 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 146235 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 217034 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 248797 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 909779 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 1641874 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 1756401 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 1763562 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 2580361 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 2582367 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile