RNA id: TU318280


Basic Information

Item Value
RNA id TU318280
length 1871
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G234375
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12783991 ~ 12785943 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacagtcagacagacaacacattTATTAAGTCAataaaaatatcaccaaacatttaaaacagtaAAACACTTCAAAATAATCCCACATCCCACAACAACGCTGGTCAAATAAGAAGCGACAAAATAAAGGGGATCAAATCACATCAAATTAAAGCAGCATCAAATGATTACATCTTAAAACACAGAATCACATGTTCTATGGAAGTCAATTAAAAGGTTCGAACCAATAAGGCAAAAATGATTAAATTAGAAACATTAAGGCATGGTTGTGATGTCAACATTTGGATTATTCAGTATTTTCCAGCGTCAAACACACGAGTGATAATGtgcagtgtgttttgtgtgttgcatgGATATGTGCAAATATATTCAACACTGACCAAGGTGTTGGAGGTGATATCAGGCCACTCAGATGTAGCAAGAAATCATATGCAAAAATCACAAACTGGGGTCACTGCTCATTTTCTTACTCATCCAGCGCAGTTTCTATGGTCACAATCTACTGTgcgtttaaagtgctcatattacgctttttggctttccccctttcctttattgtgttatatatcttttttgtgcacgttataggtttacaaagtgaaaaagcccaaagtccaccccaaagggacttaccatctccaatagaaaacactgttcccaaactgctccaaacagctctattgtagtccagcctttacttcagagacaaacatgcgtcactttgtaacacgttataatgctcgcctagctgctagcgtggcacgccctcatgctctgcaactgactagctagcagtacttactgcgcatgtgcaactcccaacaaagatggtacagaagtgtgtAAAACAgggagctcaacacacagggtgaaaagaggagctgcagcaatgtgcagtacaaaacATATGgcgttttctgaaaattaaaaccacataaacctatcctggtacaacctctaaatacaagtataaacctgaaaaggagtataatatgagcactttaagtgttATTTTAATGAATTGAGCTATAATTCATTCTAATCACGATATTTTCTTACTGTCTCACAGCTTATAGTTTGTGACATTAGAGACACCAATTGACCTGTGACAATAGATCAGACAAAGTGCAACAAAGtgaatctatatatatatatagcagtcAGTTCACTTTAAACAAAGCTGATAAACAATCACTGAAGATGTCCTTTTAAGGTCTTGTGAATTAATCAACTGTTCGACAAAAAAGGTGCTTTATCTCAATATAACTTTGGTTAGCAAAGTAATGCAAATATACATTGTTTCGAAATTAGTGAACTGACAACAACTTGACTATAAACAGGCCATGACAGGGATGCACCAATGCCAATATGTAAAGTATACTGCACTGTAGGTCAGACAGTAGCTCAAGTTCTCATATCTCCATCCATTATAACTGATCAGAACAGTAAAGAGAATACATTGTATCAGATTTATTAGGATGGTGGTGAAACCCAATCATATCTCGGGAACTTATTTACTGTTGTCTTGCTGTTTAGTAAGGTAAGATTAGAACTATTTTATACTCCATATTAGCCAGTACCACTCACTGTTAgcagtggggggaaaaaaggctgTTAGTGCATCCCTGTTGTGACATCATACAATACGTCCATCCAGCTGTACAGACCGGGAACACTGGTGAACAGCTTTCTTGCCATTTCTGCCACAAAACTTAAGAGCAATAGTGCCTCAAGATTGCTTCAACTCCACCTTAACCATTGCAGCCCCTCCAGGTGACATGGGGGGTGAGTCAGATGGGGTTGAcaagaaaatagaaaatcaaATACTGGCAGTCCTCGGAATGTCTTGGGAGTCAGCTAGATTCAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318278 lncRNA downstream 3831 12779586 ~ 12780160 (-) True G234373
TU318234 lncRNA downstream 294983 12487905 ~ 12489008 (-) True G234333
TU318227 lncRNA downstream 296661 12436996 ~ 12487330 (-) True G234330
TU318222 lncRNA downstream 349248 12432847 ~ 12434743 (-) True G234328
XR_005638300.1 lncRNA downstream 359053 12402989 ~ 12424938 (-) True LOC120554060
TU318363 lncRNA upstream 202430 12988373 ~ 12991438 (-) True G234434
TU318408 lncRNA upstream 375789 13161732 ~ 13162096 (-) True G234478
TU318420 lncRNA upstream 414035 13199978 ~ 13200294 (-) True G234490
TU318421 lncRNA upstream 416979 13202922 ~ 13205960 (-) True G234491
TU318463 lncRNA upstream 645038 13430981 ~ 13439811 (-) True G234523
XM_039792660.1 mRNA downstream 139634 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA downstream 139634 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA downstream 139635 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA downstream 141018 12602244 ~ 12642973 (-) False LOC120554061
XM_039792657.1 mRNA downstream 400977 12368396 ~ 12383014 (-) True obsl1a
XM_039793523.1 mRNA upstream 11901 12797844 ~ 12885098 (-) True filip1l
XM_039793524.1 mRNA upstream 11901 12797844 ~ 12853580 (-) False filip1l
XM_039793526.1 mRNA upstream 11907 12797850 ~ 12813762 (-) False filip1l
XM_039793525.1 mRNA upstream 18902 12804845 ~ 12885095 (-) False filip1l
XM_039793135.1 mRNA upstream 165478 12951421 ~ 12954215 (-) True LOC120554312
TU318109 other downstream 490848 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 1342065 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1737032 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1814881 10967423 ~ 10969110 (-) True G233954
TU317708 other downstream 1833362 10949523 ~ 10950629 (-) False G233954
TU318311 other upstream 167147 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 199874 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 270673 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 326215 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 2061891 14847834 ~ 14849737 (-) True G234898

Expression Profile