LOC120554115


Basic Information

Item Value
gene id LOC120554115
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10931280 ~ 10947502 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792733.1
TGGTCCAGTCCAGTCCTAGTTTAATCCCCATGGTTTCATCTCGGAAGCATGGATCCTTCTGCTCCAGTTCCACATTACCTGTAGCTCAGGGAGCACCTCACACACTACTGGGAGCTCGCACCGTCTTCTGCGGACTTTCATCTGTCAGCTGCAGACACAGTGTGTCAGTGGGATGCAGCTACAGCCGTTCTGACCAACAGCAGCTCAACAAGTCACAACACTGGACAGCTGACGGGGctgcagcagcctgGATGTGCTACTGGCTCAGCGTGTGAGTTGATAACCCAGCCTCAGTGTGCAATGTGTGGATCTGCCTTGCCCCTGTGTCTGCTCCTCTGGATAGTAGGAACGGCTGTTTCCAGGACGCAAGGTCAGGTCGTAGCTCCTGCCAGGCTGAGCGCCGAGGTAGGTCACTCCCTGCTGCTTAGCTGCAACGTCACCACGAAAGCGGGCGACACCGTCCGGCAAGTGCGCTGGCTGAACCGGCACAAGAAGGTCCTCCTGGCGTACCAACAAAGCGTGCCGATCCGCGTGAGCCATCAAGATCCCAACGTGCAGCTCACCGCCTCCCACAACGACGCCAGCTCCATCACCCTCCAGAGGGTGCGGCCTGATGACGAGGGCTGCTACAGCTGCATCTTTGATGTTTACCCCACGGGCCCGCTAGATGGCACGACCTGCATCAGCGTCACCGGTAAAGTGCGCCTGGAGGGCAACAAGACGGCGGTGAGCGGGAAGCTGGCCACCCTGTCCTGCTGGTACAGCCTCCCCGAGAGGGTGCAAcaggtgctgtggaggaagacgGCCGAGCAGGGCGACACCACCACCGTGGCCTCCTACGCCAAGCGTGGCCACCGGATTGTAGAGGAGCAGTACAAGGCCCGGTTTAGCCTGAGCCGAAGTCTGAGCGACACCCAACTCACCATCCAGGAGGTCAGGACGGAGGACGAGGCCTGCTACACCTGCGAGTTCCACACGTACCCGGACGGGACCAGACAGGACACGGCCTGCCTGTCTGTTCATGTTTTACCCAAACCAGAGGTGAGTTATGTGACCTCGTCGCCAGGAGTCACTGAGGCCAACTGCACGGCCCAGTCCCGACCCGCAGCAGAGATCTTGTGGAACTTCGGCGGGGACAACCGAACACTCGGACCGCCCGTTTCATCCGCCTACGACCAGGGCGACGGCACGACGGTAGTCACGAGCACGCTGTCGTTCCAATCAGCCATGCTCAACGACCGGTCCGTCAAGTGCATCGTGCACCACCCGGGTTTGGTCAAACCCCTGACAGTGTCCCTCAACACAGACGtgggTCCTGCCATGGTCATCCTCCTCTCAGTGTGCGGTGTGGCGGCGGTCctcctcctgtgtctctgtgtgtgtctctgcaagTGCTTCATCTGTACCGACGACTGATTTGGATGCCGACGTCACTGCTGCTTTGATGAAGGTCCAGTGGAGCTCTGAGCCTGACCTAGCTGCTCAGCACCGTGCCCTCCAGCTCAGCGTGCAGAGGAAAGGAACAGAGCTTTCACAGAACTGAACCGACGCTGCTGGTTCTGCTTCCACGGGCTGGGAAGGTCCCgctagtgcacacacacacgtttctcATGTCATTTACTACAACGTAAACAGCACTAAAACCACATTATTCAATGCTAGATATTACACTTACTCTAGAATAGTTGCTTTGATGATTGATGAGGTCCTTGTGATATGAATAAGAGGGTTTTGGATTTGGATCGGTAGATCTTATGGCTTCATAGAGGTCCAGTGGTGTTGCAGTGTATAAGGTCAACTCTCAGA
>XM_039792734.1
CTACCCAAACACTACGTGATGTTTGACAGCCAACCGACGGCTGAGCTTAGCTGTGGGTCTGCACCCTCCACACACCTTTTTGCGTATCACCTTGCTGACTAATGCCTCCTCATCCCTGCTTCCATCATCATCCGACCACTGTCATTTCCGTTGAGGATTTCAGCAGACACAGTGTGTCAGTGGGATGCAGCTACAGCCGTTCTGACCAACAGCAGCTCAACAAGTCACAACACTGGACAGCTGACGGGGctgcagcagcctgGATGTGCTACTGGCTCAGCGTGTGAGTTGATAACCCAGCCTCAGTGTGCAATGTGTGGATCTGCCTTGCCCCTGTGTCTGCTCCTCTGGATAGTAGGAACGGCTGTTTCCAGGACGCAAGGTCAGGTCGTAGCTCCTGCCAGGCTGAGCGCCGAGGTAGGTCACTCCCTGCTGCTTAGCTGCAACGTCACCACGAAAGCGGGCGACACCGTCCGGCAAGTGCGCTGGCTGAACCGGCACAAGAAGGTCCTCCTGGCGTACCAACAAAGCGTGCCGATCCGCGTGAGCCATCAAGATCCCAACGTGCAGCTCACCGCCTCCCACAACGACGCCAGCTCCATCACCCTCCAGAGGGTGCGGCCTGATGACGAGGGCTGCTACAGCTGCATCTTTGATGTTTACCCCACGGGCCCGCTAGATGGCACGACCTGCATCAGCGTCACCGGTAAAGTGCGCCTGGAGGGCAACAAGACGGCGGTGAGCGGGAAGCTGGCCACCCTGTCCTGCTGGTACAGCCTCCCCGAGAGGGTGCAAcaggtgctgtggaggaagacgGCCGAGCAGGGCGACACCACCACCGTGGCCTCCTACGCCAAGCGTGGCCACCGGATTGTAGAGGAGCAGTACAAGGCCCGGTTTAGCCTGAGCCGAAGTCTGAGCGACACCCAACTCACCATCCAGGAGGTCAGGACGGAGGACGAGGCCTGCTACACCTGCGAGTTCCACACGTACCCGGACGGGACCAGACAGGACACGGCCTGCCTGTCTGTTCATGTTTTACCCAAACCAGAGGTGAGTTATGTGACCTCGTCGCCAGGAGTCACTGAGGCCAACTGCACGGCCCAGTCCCGACCCGCAGCAGAGATCTTGTGGAACTTCGGCGGGGACAACCGAACACTCGGACCGCCCGTTTCATCCGCCTACGACCAGGGCGACGGCACGACGGTAGTCACGAGCACGCTGTCGTTCCAATCAGCCATGCTCAACGACCGGTCCGTCAAGTGCATCGTGCACCACCCGGGTTTGGTCAAACCCCTGACAGTGTCCCTCAACACAGACGtgggTCCTGCCATGGTCATCCTCCTCTCAGTGTGCGGTGTGGCGGCGGTCctcctcctgtgtctctgtgtgtgtctctgcaagTGCTTCATCTGTACCGACGACTGATTTGGATGCCGACGTCACTGCTGCTTTGATGAAGGTCCAGTGGAGCTCTGAGCCTGACCTAGCTGCTCAGCACCGTGCCCTCCAGCTCAGCGTGCAGAGGAAAGGAACAGAGCTTTCACAGAACTGAACCGACGCTGCTGGTTCTGCTTCCACGGGCTGGGAAGGTCCCgctagtgcacacacacacgtttctcATGTCATTTACTACAACGTAAACAGCACTAAAACCACATTATTCAATGCTAGATATTACACTTACTCTAGAATAGTTGCTTTGATGATTGATGAGGTCCTTGTGATATGAATAAGAGGGTTTTGGATTTGGATCGGTAGATCTTATGGCTTCATAGAGGTCCAGTGGTGTTGCAGTGTATAAGGTCAACTCTCAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792733.1 False 1806 mRNA 0.57 8 10931280 10947502
XM_039792734.1 True 1818 mRNA 0.57 8 10931280 10945860

Neighbor

gene id symbol gene type direction distance location
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding downstream 31620 10885752 ~ 10899660 (-)
LOC120554104 NA coding downstream 63777 10854723 ~ 10867503 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 145427 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 148752 10780954 ~ 10782528 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding downstream 154405 10775958 ~ 10776875 (-)
LOC120554116 NA coding upstream 819 10948321 ~ 10980875 (-)
LOC120554119 NA coding upstream 19633 10967135 ~ 10989049 (-)
LOC120554120 NA coding upstream 43047 10990549 ~ 10995360 (-)
LOC120554123 NA coding upstream 63730 11011232 ~ 11013638 (-)
LOC120554124 NA coding upstream 66493 11013995 ~ 11018662 (-)
G233939 NA non-coding downstream 7464 10915974 ~ 10923816 (-)
LOC120554109 NA non-coding downstream 82925 10837792 ~ 10848355 (-)
G233918 NA non-coding downstream 100150 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 101020 10824907 ~ 10830260 (-)
G233913 NA non-coding downstream 106424 10818253 ~ 10824856 (-)
LOC120554121 NA non-coding upstream 10408 10957910 ~ 10958290 (-)
G234024 NA non-coding upstream 93684 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 113309 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 204340 11151842 ~ 11152551 (-)
G234051 NA non-coding upstream 337290 11284792 ~ 11285090 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 406195 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 543347 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 658421 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 754470 10152861 ~ 10176810 (-)
G233644 NA other downstream 888874 9965692 ~ 10042406 (-)
G233954 NA other upstream 966 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 89853 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 189125 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 441050 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 511435 11458937 ~ 11489477 (-)

Expression


Co-expression Network