LOC120554111 (u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751)


Basic Information

Item Value
gene id LOC120554111
gene name u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10885752 ~ 10899660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792726.1
AATCGCCGTCCCTTTACGTAATGACGTTAGTCACTACGTCTCCGACGAGCCGAAAATGGCGGAGTACCTGGCATCCATTTTCGGTACAGAGAAAGACAAGGTCAATTGttccttttattttaaaattggcGCTTGCAGACATGGAGACCGCTGCTCGAGATTGCACAATAAACCAACCTTCAGCCAGACCATCTTGATTCAGAACATCTACCGTAATCCCCAGAACAGTGCACAGACGGCCGACGCTTCTCGCTGTGCCGTCAGCGATGTGGAAATGCAGGAGCACTACGACGAGTTCTTTGAGGAGGTGTTCACAGAGATGGAGGAGAAGTATGGAGAGGTGGAGGAGATGAATGTGTGCGATAACTTGGGCGACCACCTTGTCGGCAATGTTTATGTTAAGttTCGTCGTGAGGAGGATGCAGAAAAAGCGGTCATGGACCTGAACAATCGGTGGTTCAACGCCCAGCCcatccacgcagagctctcccCCGTCACTGACTTCAGGGAAGCTTGCTGCCGCCAGTATGAAATGGGAGAGTGTACCCGAGGGGGCTTCTGCAACTTCATGCACTTGAAACCCATATCGCGGGAACTTCGAAGGGAGTTGTACGGTCGCCGCAGGAAAGGGGGAAGGCCCCGCTCTCAATCGCGTTCCCGCGAACGCCGCTCCCGCTCCAGGGACCGACGGCGGGACCGCGAGAGGCCGAGAAGGTCGAGGGACCGAGAGCGCTCCGGAAGATTCTGAAAGAAGCCAAGACCGAACCCAATATCCTACCAAATCCCTCCCTCTTAACCCCAGCAGTGATGACaaagttattttctttttttggtgaATTGTtggaagtgtttttcttttattcccTTTTTTAAGACAAGCTTGTGTCGCTTTCTCAATAAAACAGATTTGTAATTCTGCA

Function

symbol description
u2af1 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1).

NR:

description
splicing factor U2AF 35 kDa subunit isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12836 U2AF1; splicing factor U2AF 35 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792726.1 True 920 mRNA 0.51 8 10885752 10899660

Neighbor

gene id symbol gene type direction distance location
LOC120554104 NA coding downstream 18249 10854723 ~ 10867503 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 99899 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 103224 10780954 ~ 10782528 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding downstream 108877 10775958 ~ 10776875 (-)
LOC120554094 crygs,LOC103371281,LOC102797316,LOC106575813 coding downstream 173913 10709781 ~ 10711839 (-)
LOC120554115 NA coding upstream 31620 10931280 ~ 10947502 (-)
LOC120554116 NA coding upstream 48661 10948321 ~ 10980875 (-)
LOC120554119 NA coding upstream 67475 10967135 ~ 10989049 (-)
LOC120554120 NA coding upstream 90889 10990549 ~ 10995360 (-)
LOC120554123 NA coding upstream 111572 11011232 ~ 11013638 (-)
LOC120554109 NA non-coding downstream 37397 10837792 ~ 10848355 (-)
G233918 NA non-coding downstream 54622 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 55492 10824907 ~ 10830260 (-)
G233913 NA non-coding downstream 60896 10818253 ~ 10824856 (-)
G233878 LOC101482024,LOC102799766,LOC102210491,LOC100699157,LOC103371275,LOC103151957 non-coding downstream 93988 10790360 ~ 10791764 (-)
G233939 NA non-coding upstream 16314 10915974 ~ 10923816 (-)
LOC120554121 NA non-coding upstream 58250 10957910 ~ 10958290 (-)
G234024 NA non-coding upstream 141526 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 161151 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 252182 11151842 ~ 11152551 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 360667 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 497819 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 612893 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 708942 10152861 ~ 10176810 (-)
G233644 NA other downstream 843346 9965692 ~ 10042406 (-)
G233954 NA other upstream 48808 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 137695 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 236967 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 488892 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 559277 11458937 ~ 11489477 (-)

Expression


Co-expression Network