LOC120554094 (crygs,LOC103371281,LOC102797316,LOC106575813)


Basic Information

Item Value
gene id LOC120554094
gene name crygs,LOC103371281,LOC102797316,LOC106575813
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10709781 ~ 10711839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792706.1
CATACgagcgcacacactcacacacacacccacacacacatacttttaACATtagtttacacacacatattcaagGGAGACCACACGGTGGACCACAGCTGGTCGCAGGATGGGCAGGATCATCTTCTACGAGGACCCAAGCTACCAGGGTCGCAGGTACGAGTGCGACGGCGACTGCACCGACTTCCACTCCTACCTGAGTCGCTGTAACTCGGCTCGAGTGGAGAGCGGGACCTGGGTGATCTACGAGAGACCGAACTACATGGGCTACCAGTACGTCCTTGGCAGAGGCGAGTACCCCAACTACCAGAGCTGGATCGGCCTCAACGATAGGGTCTGCTCCTGCAAGATGATTAACATCGCCAGTGGAGACCCTTACAAGATCCAGCTCTATGTCAAAGGGGACTTTGCCGGTCGGGTGTTTGAGGCGACTGACGACTGCCCCTCCGTGCTGGAGAACTTCCACTGGAGGGAGGTCCACTCCTGCAGGGTCCTGGGAGGCTGGTGGGTCTTCTACGAGCACCCTAACTACAAGGGCCGGCAGTACGTGCTGGAGAAAGGCGAGTACCGCAAGCCGGTGGACTGGGGCGCTGTCTGCCCCACTGTACAGTCTTTCAGAAGGCTAACTGAGTAGctaatctcctttttcttttgcgccctgctgattggctcacagaTGTCACAGCAGCCATGGCTTCAATAAAACTAAATGATGAGAAA

Function

symbol description
crygs Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Predicted to act upstream of or within morphogenesis of an epithelium. Implicated in cataract 20 multiple types.

NR:

description
PREDICTED: beta-crystallin S-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792706.1 True 720 mRNA 0.55 3 10709781 10711839

Neighbor

gene id symbol gene type direction distance location
LOC120554091 fam184a,LOC102306171,LOC101485268,LOC103474971,LOC108246794,LOC107092234,LOC102213346,LOC100706589 coding downstream 59849 10595089 ~ 10649932 (-)
LOC120554089 NA coding downstream 118712 10551949 ~ 10591069 (-)
LOC120554088 ptgfrn coding downstream 167146 10531827 ~ 10542635 (-)
slc5a3a slc5a3,LOC104962291 coding downstream 266731 10435314 ~ 10443050 (-)
ddx3xb LOC101487926 coding downstream 281176 10412435 ~ 10428605 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding upstream 64119 10775958 ~ 10776875 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding upstream 69115 10780954 ~ 10782528 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding upstream 73035 10784874 ~ 10785853 (-)
LOC120554104 NA coding upstream 142884 10854723 ~ 10867503 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding upstream 173913 10885752 ~ 10899660 (-)
LOC120554081 NA non-coding downstream 334850 10372988 ~ 10374931 (-)
G233685 LOC103356767 non-coding downstream 487606 10220878 ~ 10222175 (-)
G233675 LOC104966322 non-coding downstream 502306 10206152 ~ 10207475 (-)
LOC120554344 NA non-coding downstream 513405 10191223 ~ 10196376 (-)
LOC120554591 NA non-coding downstream 559365 10129535 ~ 10150416 (-)
G233855 NA non-coding upstream 13290 10725129 ~ 10725359 (-)
G233857 NA non-coding upstream 25796 10737635 ~ 10738167 (-)
G233858 NA non-coding upstream 26498 10738337 ~ 10738549 (-)
G233859 NA non-coding upstream 31235 10743074 ~ 10743463 (-)
G233872 LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769 non-coding upstream 62330 10774169 ~ 10775658 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 184696 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 321848 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 436922 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 532971 10152861 ~ 10176810 (-)
G233644 NA other downstream 667375 9965692 ~ 10042406 (-)
G233954 NA other upstream 236629 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 325516 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 424788 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 676713 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 747098 11458937 ~ 11489477 (-)

Expression


Co-expression Network