LOC120554081


Basic Information

Item Value
gene id LOC120554081
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10372988 ~ 10374931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317438
GTCAGCAGCCAAGATGGCGGAGGCTACGGGTAAAAGAAAAGATAGCTTTTCATACAAAAAGATGACTCAATAACCGTTCAGTCGTGGATTTATCTTTATGAAATGATTGTGAGAAGTCACAGAAGTACCACGCCGGATTACTAAACTTCTGGAAGGGCTACGGTTGCACTGAAGTCCTCTGCCCTTTGAAACGGCCAAGCTGTTAGCTGTCAGGCTAAAAACACAGACCAAGGCTAGGTTGAgtcataattatttatttattttacaaagagAATATAATGCTATTCCATGATAGATTAAAACGCTTCTGGATGGCCTACAATGGCATTGAGGACTTCGTTGAAATAGCGCCTTCTTCCGCTTCTAAACAAAAAAATGAGTTTCTGGACCACAACTGAGAAGTTCCTTCACATCATTCATGTCTTCTTCATACTGTACTCACAGTATactcatagtattgtatgtcatgaTTTTTGTGCGTAAAAACGTaactgtatagtatgtcgaaaaaaaccatagtatagtatgtctaaaaaagtaatacaaaaaacatacatacataaaaatgcagtaatagtagtagtattatgtgttatgtaaaaaaacaaatcaatgtAAAAGTCATACAAAATGTCTGAAAGTTAAACTGCATTCCATAAAAGTGGATGTACATTTTTTGGGTGTAAAacctttaaataaatgatctgtCAGGATGATGACCCATGACCTGCGTTTCCTCAAACCAGAGTTCTATCACACTGAGCTCTCTCCTCCAAAACTAAAAGCCTTTTCCGTATTTTCGTGCTgggaggttggtcgggtggCGCGGAGAGTGTGCAATACATGGAAGTACCCTTCCAAGCACGTTGTCAGGTTCAAGACCTGCTCGCTGCCAGTGTATGTGCAAACACTTAAGAtaggacacacacaggaatagACAAATACAAAGTGTGAACAACAAATAACAGTACCAACAGCTGATAGGTCAGCTTCAGGAATAGCTCACTGAGATAAGCTACTGACTTCAACTctgaaatatgaacaataaatacaacttCCAACCAGAC
>XR_005638314.1
ACCTAAACTTCATGTGATTGGTCGACGAAGCCATCAGTCAAGACAGTCAGCAGCCAAGATGGCGGAGGCTACGGGTAAAAGAAAAGATAGCTTTTCATACAAAAAGATGACTCAATAACCGTTCAGTCGTGGATTTATCTTTATGAAATGATTGTGAGAAGTCACAGAAGTACCACGCCGGATTACTAAACTTCTGGAAGGGCTACGGTTGCACTGAAGTCCTCTGCCCTTTGAAACGGCCAAGCTGTTAGCTGTCAGGCTAAAAACACAGACCAAGGCTAGGTTGAgtcataattatttatttattttacaaagagAATATAATGCTATTCCATGATAGATTAAAACGCTTCTGGATGGCCTACAATGGCATTGAGGACTTCGTTGAAATAGCGCCTTCTTCCGCTTCTAAACAAAAAAATGAGTTTCTGGACCACAACTGAGAAGTTCCTTCACATCATTCATGTCTTCTTCATACTGTACTCACAGTATactcatagtattgtatgtcatgaTTTTTGTGCGTAAAAACGTaactgtatagtatgtcgaaaaaaagtgataaaaagccatattatagtacgttgaaaatagtgataaaaagccatagtatagtatgtctaaaaaagtaatacaaaaaacatacatacataaaaatgcagtaatagtagtagtattatgtgttatgtaaaaaaacaaatcaatgtAAAAGTCATACAAAATGTCTGAAAGTTAAACTGCATTCCATAAAAGTGGATGTACATTTTTTGGGTGTAAAacctttaaataaatgatctgtCAGGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317438 True 1067 lncRNA 0.39 3 10372988 10374886
XR_005638314.1 False 807 lncRNA 0.35 2 10373339 10374931

Neighbor

gene id symbol gene type direction distance location
kpnb3 ipo5 coding downstream 85827 10275031 ~ 10287161 (-)
harbi1 harbi1 coding downstream 107866 10261823 ~ 10265122 (-)
unc50 unc50 coding downstream 157516 10208422 ~ 10215472 (-)
sox1b sox1,LOC104929113,LOC102792425 coding downstream 410468 9960572 ~ 9962520 (-)
tubgcp3 tubgcp3 coding downstream 519428 9840242 ~ 9853560 (-)
gpr180 gpr180,LOC102794014 coding upstream 15020 10389951 ~ 10398975 (-)
ddx3xb LOC101487926 coding upstream 37504 10412435 ~ 10428605 (-)
slc5a3a slc5a3,LOC104962291 coding upstream 60383 10435314 ~ 10443050 (-)
LOC120554088 ptgfrn coding upstream 156896 10531827 ~ 10542635 (-)
LOC120554089 NA coding upstream 177018 10551949 ~ 10591069 (-)
G233685 LOC103356767 non-coding downstream 150813 10220878 ~ 10222175 (-)
G233675 LOC104966322 non-coding downstream 165513 10206152 ~ 10207475 (-)
LOC120554344 NA non-coding downstream 176612 10191223 ~ 10196376 (-)
LOC120554591 NA non-coding downstream 222572 10129535 ~ 10150416 (-)
G233662 NA non-coding downstream 245423 10126900 ~ 10127565 (-)
G233855 NA non-coding upstream 350198 10725129 ~ 10725359 (-)
G233857 NA non-coding upstream 362704 10737635 ~ 10738167 (-)
G233858 NA non-coding upstream 363406 10738337 ~ 10738549 (-)
G233859 NA non-coding upstream 368143 10743074 ~ 10743463 (-)
G233872 LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769 non-coding upstream 399238 10774169 ~ 10775658 (-)
G233703 atg13 other downstream 100129 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 196178 10152861 ~ 10176810 (-)
G233644 NA other downstream 330582 9965692 ~ 10042406 (-)
G233510 LOC103372156,LOC102206165,LOC102306683 other downstream 745047 9525789 ~ 9627941 (-)
G233521 zc3h13,rpl31,LOC106575915,LOC102795706 other downstream 814148 9553485 ~ 9558840 (-)
LOC120554082 NA other upstream 8757 10383688 ~ 10387933 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other upstream 89391 10464322 ~ 10525085 (-)
G233954 NA other upstream 573537 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 662424 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 761696 11136627 ~ 11139245 (-)

Expression


Co-expression Network