G233872 (LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769)


Basic Information

Item Value
gene id G233872
gene name LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10774169 ~ 10775658 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317563
CCAGCATGTTTATTGAGAACAGAGAGTGGAAGAAGGTCCAAAAGACTTCTAGTTTAAGTCAGTGATCCGCCTGAGCGAGCCGATCCTTGGACTGGCGGCGCCCCAGTCGCTGTACCTGCGGTATTCGCCGGGTCTAAGGTAGTAGGGTCTTCCCCTGTAGTTGGGCTGGTCGTACATGAGCCAGTGGCCGTCAACCACGTTACACGAGTTAATGTCAGACATACGCAGGCGGTCCTGGACGTTGGGGCAATCATCGCTCACCTCCTGCATTTGGCCGCCCATGTCTGGACGCTcatacaattttattttgtaggaaCCTCGGTGCACGGGAATCATGCGACAGGAGCGGATGCAGTCATTGATGCCAATCATGCGCTGGTTGTCGGAATACTCCCCTTTGCGGAGGAAGTACTGGTGGCCCAGGTACTGGGGTCTCTCGTACACCATGAAGCAGCCGCTCTCCACCCGTACGGAGTTGCAGCGGTTGAAGTAGGGGTGCAGGTCAGCACAGTCGCTCATGCACTCATGGTGCCGACCCTGGAAATTTCTGTCCTCGTAGAATATGATCTTTCCCATTGTCACATTAGTGGGGGCCACGCTGGCGCTCAATAGACGCTCTCCGTGCTGCTGTCCTTTTATATAAAGTAGCTGTGTGATG

Function

NR:

description
PREDICTED: gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317563 True 658 lncRNA 0.54 3 10774169 10775658

Neighbor

gene id symbol gene type direction distance location
LOC120554094 crygs,LOC103371281,LOC102797316,LOC106575813 coding downstream 62330 10709781 ~ 10711839 (-)
LOC120554091 fam184a,LOC102306171,LOC101485268,LOC103474971,LOC108246794,LOC107092234,LOC102213346,LOC100706589 coding downstream 124237 10595089 ~ 10649932 (-)
LOC120554089 NA coding downstream 183100 10551949 ~ 10591069 (-)
LOC120554088 ptgfrn coding downstream 231534 10531827 ~ 10542635 (-)
slc5a3a slc5a3,LOC104962291 coding downstream 331119 10435314 ~ 10443050 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding upstream 300 10775958 ~ 10776875 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding upstream 5296 10780954 ~ 10782528 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding upstream 9216 10784874 ~ 10785853 (-)
LOC120554104 NA coding upstream 79065 10854723 ~ 10867503 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding upstream 110094 10885752 ~ 10899660 (-)
G233859 NA non-coding downstream 30706 10743074 ~ 10743463 (-)
G233858 NA non-coding downstream 35620 10738337 ~ 10738549 (-)
G233857 NA non-coding downstream 36002 10737635 ~ 10738167 (-)
G233855 NA non-coding downstream 48810 10725129 ~ 10725359 (-)
LOC120554081 NA non-coding downstream 399238 10372988 ~ 10374931 (-)
G233876 LOC108246801,LOC102799488,LOC101482313,LOC102210781,LOC107380932,LOC101064696 non-coding upstream 10667 10786325 ~ 10788102 (-)
G233878 LOC101482024,LOC102799766,LOC102210491,LOC100699157,LOC103371275,LOC103151957 non-coding upstream 14702 10790360 ~ 10791764 (-)
G233913 NA non-coding upstream 42595 10818253 ~ 10824856 (-)
LOC120554110 NA non-coding upstream 49249 10824907 ~ 10830260 (-)
G233918 NA non-coding upstream 53688 10829346 ~ 10831130 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 249084 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 386236 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 501310 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 597359 10152861 ~ 10176810 (-)
G233644 NA other downstream 731763 9965692 ~ 10042406 (-)
G233954 NA other upstream 172810 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 261697 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 360969 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 612894 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 683279 11458937 ~ 11489477 (-)

Expression


Co-expression Network