RNA id: XM_039792706.1


Basic Information

Item Value
RNA id XM_039792706.1
length 720
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC120554094
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10709781 ~ 10711839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATACgagcgcacacactcacacacacacccacacacacatacttttaACATtagtttacacacacatattcaagGGAGACCACACGGTGGACCACAGCTGGTCGCAGGATGGGCAGGATCATCTTCTACGAGGACCCAAGCTACCAGGGTCGCAGGTACGAGTGCGACGGCGACTGCACCGACTTCCACTCCTACCTGAGTCGCTGTAACTCGGCTCGAGTGGAGAGCGGGACCTGGGTGATCTACGAGAGACCGAACTACATGGGCTACCAGTACGTCCTTGGCAGAGGCGAGTACCCCAACTACCAGAGCTGGATCGGCCTCAACGATAGGGTCTGCTCCTGCAAGATGATTAACATCGCCAGTGGAGACCCTTACAAGATCCAGCTCTATGTCAAAGGGGACTTTGCCGGTCGGGTGTTTGAGGCGACTGACGACTGCCCCTCCGTGCTGGAGAACTTCCACTGGAGGGAGGTCCACTCCTGCAGGGTCCTGGGAGGCTGGTGGGTCTTCTACGAGCACCCTAACTACAAGGGCCGGCAGTACGTGCTGGAGAAAGGCGAGTACCGCAAGCCGGTGGACTGGGGCGCTGTCTGCCCCACTGTACAGTCTTTCAGAAGGCTAACTGAGTAGctaatctcctttttcttttgcgccctgctgattggctcacagaTGTCACAGCAGCCATGGCTTCAATAAAACTAAATGATGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317516 lncRNA downstream 244477 10464328 ~ 10465304 (-) False si:ch211-132g1.7
TU317408 lncRNA downstream 321905 10383688 ~ 10387876 (-) True LOC120554082
XR_005638314.1 lncRNA downstream 334850 10373339 ~ 10374931 (-) False LOC120554081
TU317438 lncRNA downstream 334895 10372988 ~ 10374886 (-) True LOC120554081
TU317318 lncRNA downstream 487606 10220878 ~ 10222175 (-) True G233685
TU317544 lncRNA upstream 13290 10725129 ~ 10725359 (-) True G233855
TU317546 lncRNA upstream 25796 10737635 ~ 10738167 (-) True G233857
TU317547 lncRNA upstream 26498 10738337 ~ 10738549 (-) True G233858
TU317548 lncRNA upstream 31235 10743074 ~ 10743463 (-) True G233859
TU317563 lncRNA upstream 62330 10774169 ~ 10775658 (-) True G233872
XM_039792700.1 mRNA downstream 59849 10595089 ~ 10649932 (-) False LOC120554091
XM_039792697.1 mRNA downstream 59849 10595089 ~ 10649932 (-) False LOC120554091
XM_039792702.1 mRNA downstream 59849 10595089 ~ 10649932 (-) True LOC120554091
XM_039792701.1 mRNA downstream 59849 10596429 ~ 10649932 (-) False LOC120554091
XM_039792698.1 mRNA downstream 59849 10596441 ~ 10649932 (-) False LOC120554091
XM_039792715.1 mRNA upstream 64119 10775958 ~ 10776875 (-) True LOC120554102
XM_039792712.1 mRNA upstream 69115 10780954 ~ 10782528 (-) True LOC120554100
XM_039792709.1 mRNA upstream 73035 10784874 ~ 10785853 (-) True LOC120554097
XM_039792718.1 mRNA upstream 142884 10854723 ~ 10867503 (-) True LOC120554104
XM_039792726.1 mRNA upstream 173913 10885752 ~ 10899660 (-) True LOC120554111
TU317412 other downstream 321848 10384445 ~ 10387933 (-) False LOC120554082
TU317407 other downstream 321905 10384851 ~ 10387876 (-) False LOC120554082
TU317405 other downstream 321905 10385003 ~ 10387876 (-) False LOC120554082
TU317411 other downstream 322183 10385003 ~ 10387598 (-) False LOC120554082
TU317341 other downstream 436922 10271069 ~ 10272859 (-) True G233703
TU317688 other upstream 236629 10948468 ~ 10958632 (-) False G233954
TU317694 other upstream 237684 10949523 ~ 10951480 (-) False G233954
TU317708 other upstream 237684 10949523 ~ 10950629 (-) False G233954
TU317684 other upstream 255584 10967423 ~ 10969110 (-) True G233954
TU317805 other upstream 328168 11040007 ~ 11046959 (-) False LOC120554127

Expression Profile