RNA id: XM_039792712.1



Basic Information


Item Value
RNA id XM_039792712.1
length 828
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120554100
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10780954 ~ 10782528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCTTTTGATGTCACATGATGCATAAAAGGCAGCGCGCCAGTGGGGAGAACAACAGAAATCAAATAGCGCGACCATGAGCGGAAAGATCGTCTTCTTCGAGGGGAGAAACTTCCAGGGCCGCTCGTATGAGTGCATCAGCGACTGCTCTGAAATCACCTCCCACCTGAGCCGATGCAGCTCctgcaaggtggagagtgggacGTTCATGGTCTACGACCAGCCCAACTACACGGGCCAGCAGTACCTCCTGACCAGGGGAGAGTACCCCGAGTACCAGAATACCATCGGCTTCAACGACTGCATTCAGTCCTGCCGCATCGTCCCCGTGCACAAGGGGCCCTTTAAAATGAGGATCTACGAGAGAGCGAACTTTGAGGGGCAGATGCATGAACTGACTGATGACTGCGACTCCATCCAGGATCACTATCACATGTCTGACATGCAGTCCTGCAACGTGATGGAAGGCTACTGGTTGATGTTCGAGCAGCCAAACTACGAAGGCAAGATGTTTTATCTGAAACCAGGAAAGTACAGGAACCTCAAAGAGATTAGCAGCGATGACACGAGGTTCAACTCAGTCAGACGCATCACTGAATCTTAACTGTCTAATCGCTTACATTTAGCTAATTGGTTTTGCAGAtgcttttgttttattaacattaacaaGATGTCGAAGAGGGAGGCAAAAAAAGAAGGAGCCTTGTTTTTATCCTGAAACTGTGATTTGTGCATTGTTTGCATGTAGTTCCAGTTGTACTGTGCAATCCAGCCACGATGAATTTACCTCTATAACTGTGTGATGCACACAATAAAATGATTTGCTGCATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU317563 lncRNA downstream 5296 10774169 ~ 10775658 (-) True G233872
TU317548 lncRNA downstream 37491 10743074 ~ 10743463 (-) True G233859
TU317547 lncRNA downstream 42405 10738337 ~ 10738549 (-) True G233858
TU317546 lncRNA downstream 42787 10737635 ~ 10738167 (-) True G233857
TU317544 lncRNA downstream 55595 10725129 ~ 10725359 (-) True G233855
TU317568 lncRNA upstream 3797 10786325 ~ 10788102 (-) True G233876
TU317571 lncRNA upstream 7832 10790360 ~ 10791764 (-) True G233878
TU317612 lncRNA upstream 35725 10818253 ~ 10824856 (-) True G233913
XR_005638316.1 lncRNA upstream 42379 10824907 ~ 10830256 (-) True LOC120554110
TU317619 lncRNA upstream 45326 10827854 ~ 10830260 (-) False LOC120554110
XM_039792715.1 mRNA downstream 4079 10775958 ~ 10776875 (-) True LOC120554102
XM_039792706.1 mRNA downstream 69115 10709781 ~ 10711839 (-) True LOC120554094
XM_039792702.1 mRNA downstream 131022 10595089 ~ 10649932 (-) True LOC120554091
XM_039792709.1 mRNA upstream 2346 10784874 ~ 10785853 (-) True LOC120554097
XM_039792718.1 mRNA upstream 72195 10854723 ~ 10867503 (-) True LOC120554104
XM_039792726.1 mRNA upstream 103224 10885752 ~ 10899660 (-) True LOC120554111
XM_039792733.1 mRNA upstream 148752 10931280 ~ 10947502 (-) False LOC120554115
XM_039792734.1 mRNA upstream 148752 10931280 ~ 10945860 (-) True LOC120554115
TU317412 other downstream 393021 10384445 ~ 10387933 (-) False LOC120554082
TU317407 other downstream 393078 10384851 ~ 10387876 (-) False LOC120554082
TU317405 other downstream 393078 10385003 ~ 10387876 (-) False LOC120554082
TU317411 other downstream 393356 10385003 ~ 10387598 (-) False LOC120554082
TU317341 other downstream 508095 10271069 ~ 10272859 (-) True G233703
TU317688 other upstream 165940 10948468 ~ 10958632 (-) False G233954
TU317694 other upstream 166995 10949523 ~ 10951480 (-) False G233954
TU317708 other upstream 166995 10949523 ~ 10950629 (-) False G233954
TU317684 other upstream 184895 10967423 ~ 10969110 (-) True G233954
TU317805 other upstream 257479 11040007 ~ 11046959 (-) False LOC120554127

Expression Profile