rbm15 (rbm15,LOC107731203)


Basic Information

Item Value
gene id rbm15
gene name rbm15,LOC107731203
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12599698 ~ 12604705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155155
ttttttttttaaatagtagtcTTGCCCATAGAACACAgtacaaaaaaatcaaagaacatTTGATAGAATAGCAGAATGTAATGCATGtggctttttcatttttgtcagcATTGGCCTCAGTTTTGTTCTATATGCCACATTAAAGGAATTGTTAAATTGATGTCCAGGTACCAAAATGTGAGTGGAAAAGTGTTCCTTCCAATTTGATAAACataataatgtcataataaTGCCTATGTTGATGTAATTCTGTTATGGTCTATATTCTCCAtatattaacacactttaaTTGTCAGCTTAGGGCATACTTGAAGCAGGGCTGTACAATTAGAGGTGAtcaaagtgtttattatttttcagtacattaataatgattatGGTTCAGTGCAAAACCACAGAGCGCTGTAATTGGTCAGCACATGTGATTGTGTAGTGATCATACCACCAAAGAGCATGCATTAATTATTGAGTCTACTTTTTGTTGGAGTATGCTTAATTGTGCAGCCCTAAATTTAAGTATGTTTTAAGCTGAATAATCAGCTATGTATGTTTTGATAGTCTGTTATAGACATAGCATACTTTTCTAACCCCCTACATCAGAAATTTTTTGCATTTCTATCAATGTTGAGGTTTTTTTGCAGTGTCTTGAGTCTGATTATTAACAAATGTGTTAATTTCATCTGTATTATGCCAtctatcattttaaaatcacactaaattgcatttttaaagcAGATTGGTTTGTGAATTAAGATAATTAAGCTGTTCTATATGTATGGATGAGTAGGAGATACTGTACTTTCAGTAGCCATCTCTCAGGATGAAAAAGGACCGTTGCAACAGAGGACTTCCCATGGCTGGAATCAAAATGATTGAGTTGATACAGGAGCCCTTTGGATACAGAGGGGCAAGAGCTTTTCGTTTAGTGATTGTGTATTCTCGCTGAGAGAGCAGCTTCAcacttgtgtaaatgtttttgtgcttaCACTTCCCATATTTAAACGGAAATATGACCGTCTTGCTTTGTGGTGTGTTTACCTGATTTCttgaaggagaggaaaaaaagaggaatcgCTCATTCACATCTCGCACAGCTAAGAAATAGCtgtccacataca
>XM_034306621.1
CCAATCAAATTCTTAGGGCGAGGAACGCTGTAGTCTATACAAGATGGCGTATGTGGTTGTTTTGCAGCTACAATATTGAGCGAATTGCAGTATTTTGTCATCTAAATTAATCAATTGTGGTAGTGTAGTCGCTTTGTAATTGTTTGTTATAAGCCGTAGATACGCAGAATATCCAtcatgaaaggaaaagaaaggtcGCCAGTGAAAAAACGCTCAAGGGCCGTGGACGATGTTCGAGACAGGGGAGGAAGCCACCCGAGCAGCAAGAAAATGGGGGTTGTGGCGATTTCTGGCGGAAGCAACAATGGAAATAGCTCTTCCAAAAGCGAAGGAGGTTCGGCAAGAAGGAGTTTACTTGGAGACAAAAGGGATAGTCGGGACTTTGACGGACATGCTTCTAGTCGCACGGGGAACAGTCACAGCTACACCAGTCCGGTTGCTAGCGCTAGCAGCAAGAATCACAACTCGAGCCTTTCGCTCGAAGCGGCCGCGAGAGGCAACTCGCGCTCAGACCAGCGCAGCCAGCTCGCCGCTAACGAGAGTGAGTACAAAACGCTAAAAATAAGCGAACTGGGGTCGCAGCTGAGCGACGAGGAGATCGAGGACGGTTTGTTTCACGAGTTCAAGAAATTCGGCGACGTGAGTGTGAAAATTAGCCGCGTTAACGACGAAAGAATTGCTTTTGTGAACTTCAGGAGGCCCGACGATGCCAGAGCGGCGAAACACGCCCGAGGTCGCCTGGTGCTCTATGACCGGCCTTTGAAAATCGAGGCGGTGTACATGAACAGGAGGAGAAGTCGATCACCCGTGGAAAAAGACCACTTTTCTGCCGTGGCTGGCCACAGACATTTGCACACGCAGAGGCCTCTGTCCCCTACTGGACTAGGTTATAGGGACTACAGGCTCCAGCAGTTAGCACTTGGTCGACTTCCTCCACCCCCACCGCCTCCCTTACccagagagctggagagagagagagagtttgctTTTTATGAAGCCAGAGCAAGACCCACTTACATTGCTGAACGAGCTGCTGCCTTTCGTGAAGAGGATTTTATTTCTCCCGAGGACGACCAAAGAGCTAACCGAACATTGTTTTTGGGTAACTTGGACATCACAGTAACAGAAAATGATCTGAGGAGGGCATTTGACCGCTTCGGGGCCATCACTGAAGTGGACATCAAGAGGCCCACTCGGGGCCAAAACAGTACATATGGCTTTCTTAAGTTTGAGAACTTGGACATGGCCCACAGAGCAAAGATCAGCATGTCAGGAAAAGTGGTCGGCCGAAATGCTATTAAAATTGGTTACGGAAAGGCGACCCCAACAACACGCCTCTGGGTGGGGGGCCTCGGACCTTGGGTTCCCCTGGCTGCATTAGCAAGGGAGTTTGATCGCTTTGGCACTATTAGGACTATAGATTACAGGAAAGGGGACACGTGGGCCTACATTCAGTATGAAAGCTTGGATGCCGCTCAGGCAGCTTGCACACACATGCGTGGTTTTCCTCTTGGAGGCCCAGACCGACGGCTCAGAGTGGATTTTGCAGACACTGAGCACCGCTACCAACAGCAGTTCCTGCAGCCGCTCCCCCTGCCCCACTACGAGGTCGTGGCTGAGTCCTTTGTTCACCGCGCAACCCCTGAAGCTATCAGGGTCAGAGAAAGAACTCCCCCGCCACTGCATTTTAGAGAACGGGAGCTCTATGCTGGTGCAGAATGGCCAGCCCCTGCCATCCGTGAACGAGTAAGAACTCCTGCATTCGAACCTCTGGAGCACTTGGAACGAGATCGACGGCCCAGAGAGCCATGGTCCCTGGAGCGGGAGCTACCAAGCAGAGATGCTGCAAGAAAACGGCGCCTTCTTGAGGATGGACGGCACCTCGACTGTTCACCagacagcagcagtgagtgggCAGTCCGGCGCCGGAGAGCCCCGTCCACTGAGGGCAGCCCAGGAGGTAGCAGTCGCGACGGCCGCTTCAGCGACTCTGAGAGGCCAACGAGAGCAGAGCGGCTGTCACCAGCGCGAGAGCGCCGCAGCAGCCTAGACAGGGCTCCTGGAGAGAAGCGCCTcaagagcagcagcagcttgtCTGAGTCCAGCATTGGTGCAAGCCCGTCAGAGAGAAAACGCAAAGCAAGTGAACTGAGCAAAGGGCcttcaaagagagagagagctgaagggAGCTCCAAGGGCAGTCAGTCATCCAAGCAGGACACTGGCGGGAAGCTGAGCATGGCCTGGAATGGAATGCTGCTCCTCAAGAATAGCAACTTCCCAGCCAGCATGCACATCCTGGAGGGAGACCTGAGTGTGGCCAACACCCTTCTAGTCGACGGCAGCACGGGAGGGAAGGTGACTCAGCTCCGCATCACACAGCGCCTTCGGCTCGACCAGCCCAAGATGGATGAGGTGTCACGCCGCATCAAAGTGGCAGGCCCAGGCGGGTATGCCATTCTCCTTGCAGTTCCTGCCAGCTCCGAGGACAcgtcttcatcctcctcttcgaCAGACCCAGCGGCTTCGACTCAGCGTCCTCTGCGCAACCTGGTCTCGTATCTGAAGCAAAAGCAGGCGGCCGGGGTAATCAGTTTACCCGTGGGGGGCACTCGCGATAAGGACAACGCGGGGGTGCTGCACGCGTTCCCACCCTGCGATTTCTCTCAGCAGTTCTTAGATTCCTCTGCAAAAGCTCTTGCCAAAACAGAAGAGGACTATCTTGTCATGATCATTGTCCGCGGAGCATCCTAACAGtcagaacacaaacaaaaaaaaagcattgttataaaaaagaaatgtctcATTTGCATGCTCTGTTAAGCCTGGTGCAGCAACCATAGTTTAAACAGTTATTAAAAGGGTATGTGTCATCTGTTCTGCCAAATGCAATGCATGAAAAACATGTCTCATATAGCAAAATTGGTTTTCATATTGCAATATTTGCTCACCATTGCAAGTCGAGTTTCCAAACCAAATCATTGTGATACTGTGCAACTgtatgaaagagtgaaagataaaaggcagacacaatttgaaaactgaatatttacactatacactgtactgCTGAGAACCTAATACATGTTTGTTTAGCCATTAGATTGTTCCCTATATGGAGATTAACAAGAATGTTGGTTCATGTaggtatattatatatattttttatttaaaaaaagaggttaTTGACTCATTGTGGTTTAACGCTTGGAACAATCAGTTAATGATGAAGAGACAGTGTAACATAGGCCTAGGTGTGTAGTTCTATAGTTCACCTAAAGCAGTCCAGGTATTTCTCACTTAAAACTGCATGTTGACTGTTGTCCTGTTTTGAAACCGTTACGGGGTAGTTCACAGTTCAGAAGTTTGCAGACTATAAACTAATGTATATACAACTGTACCTTAGTATTGAAGTGTTTATCAGTGTGTAACTGGGCAAGCATTTAATGAAGCTACAAATTGTTTTCTTCAAGATTTTATTATACCCAAGGCATCTTATAAtatgaatcagtgattattttggTCTTCTTTTAATTCTAACATATTTCAAAGCCACCATTTGCACAGACCGTTGCACATAGCTTAAAATTTAGATATCCTCTTATTTGTCTTTTTGTATTTGACAAGATCATCTGAAGAACTAGTTCTAttgagacatttttttattttttactttgctTTTTGCTCATCCCTAATAATTTCTGTCCAGGATTGGTAATATAGTCAGCCACTAGTTTCTACTGATTTCAATgcttttattgttgtgttttgtttttttttccttttcttttttttttttttttttttctttttttttttttttttttttaaatagtagtcTTGCCCATAGAACACAgtacaaaaaaatcaaagaacatTTGATAGAATAGCAGAATGTAATGCATGtggctttttcatttttgtcagcATTGGCCTCAGTTTTGTTCTATATGCCACATTAAAGGAATTGTTAAATTGATGTCCAGGTACCAAAATGTGAGTGGAAAAGTGTTCCTTCCAATTTGATAAACataataatgtcataataaTGCCTATGTTGATGTAATTCTGTTATGGTCTATATTCTCCAtatattaacacactttaaTTGTCAGCTTAGGGCATACTTGAAGCAGGGCTGTACAATTAGAGGTGAtcaaagtgtttattatttttcagtacattaataatgattatGGTTCAGTGCAAAACCACAGAGCGCTGTAATTGGTCAGCACATGTGATTGTGTAGTGATCATACCACCAAAGAGCATGCATTAATTATTGAGTCTACTTTTTGTTGGAGTATGCTTAATTGTGCAGCCCTAAATTTAAGTATGTTTTAAGCTGAATAATCAGCTATGTATGTTTTGATAGTCTGTTATAGACATAGCATACTTTTCTAACCCCCTACATCAGAAATTTTTTGCATTTCTATCAATGTTGAGGTTTTTTTGCAGTGTCTTGAGTCTGATTATTAACAAATGTGTTAATTTCATCTGTATTATGCCAtctatcattttaaaatcacactaaattgcatttttaaagcAGATTGGTTTGTGAATTAAGATAATTAAGCTGTTCTATATGTATGGATGAGTAGGAGATACTGTACTTTCAGTAGCCATCTCTCAGGATGAAAAAGGACCGTTGCAACAGAGGACTTCCCATGGCTGGAATCAAAATGATTGAGTTGATACAGGAGCCCTTTGGATACAGAGGGGCAAGAGCTTTTCGTTTAGTGATTGTGTATTCTCGCTGAGAGAGCAGCTTCAcacttgtgtaaatgtttttgtgcttaCACTTCCCATATTTAAACGGAAATATGACCGTCTTGCTTTGTGGTGTGTTTACCTGATTTCttgaaggagaggaaaaaaagaggaatcgCTCATTCACATCTCGCACAGCTAAGAAATAGCtgtccacatacacacaaaaaagtgcACTGGCACTTATTTGATTTTGTCTTACTATCAATAAATTGTGTCATTTGAGGGAGAAA

Function

symbol description
rbm15 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15 (RNA binding motif protein 15).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
TU155155 False 1118 lncRNA 0.35 1 12603517 12604634
XM_034306621.1 True 5008 mRNA 0.45 1 12599698 12604705

Neighbor

gene id symbol gene type direction distance location
alx3 alx3 coding upstream 2259 12586799 ~ 12597439 (+)
kcnc4 kcnc4,LOC107731196 coding upstream 90032 12478618 ~ 12509666 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding upstream 123948 12450275 ~ 12475750 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding upstream 151714 12438112 ~ 12447984 (+)
sort1b LOC108265432,LOC108442120 coding upstream 166552 12414194 ~ 12433146 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding downstream 41984 12646689 ~ 12649107 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding downstream 46520 12651225 ~ 12654683 (+)
LOC113531715 LOC108265567,LOC108414659 coding downstream 54323 12659028 ~ 12662145 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 171221 12775926 ~ 12783157 (+)
dclre1b dclre1b coding downstream 187511 12792216 ~ 12798367 (+)
LOC117597859 NA non-coding upstream 66440 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 373336 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 382484 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 881813 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 1047667 11548962 ~ 11552031 (+)
G131606 NA non-coding downstream 85462 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 96007 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 107920 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 204418 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 332599 12937304 ~ 12941456 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 369697 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 603846 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 885666 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 902907 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 965854 11622302 ~ 11633844 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1100461 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1285699 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1345232 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1717467 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2335596 14940301 ~ 14982884 (+)

Expression


Co-expression Network