LOC117597872


Basic Information

Item Value
gene id LOC117597872
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12700712 ~ 12701501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578634.1
AAATGACACATAGCGCCTTCTGCATTGCCATAGTAGGTCTTGATTGCTGAAGGAAAAAGATACATTCATGCTTACATGAAACTGTGATAATCAGCTCACACCTTGAAGGAAGACCTGCATGTTTGCATGAGTATCCTCAACCCTTACCTGGTTCATTGCCAAGGGTCCAgtattcatcatcatcaaagtGAGCGTCTCCCTGCACCCCTTCACCTGGAGGATAAGCATGCGCTAACAGGCCGTCTTTCCCATCAAATGGATCATGATGTCAGCAATGCCATTGTAGAGACGTGTGAAAGTCAGGGGTGTGACATCACTCCACACTTTGAAGGCTCGGGCAAAGGCATCGTCAGTAATAGAGGCGTCTAAGTCTGGT

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0002633 positive regulation of granuloma formation biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578634.1 True 376 lncRNA 0.47 3 12700712 12701501

Neighbor

gene id symbol gene type direction distance location
LOC113531715 LOC108265567,LOC108414659 coding upstream 38567 12659028 ~ 12662145 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 46029 12651225 ~ 12654683 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding upstream 51605 12646689 ~ 12649107 (+)
alx3 alx3 coding upstream 103273 12586799 ~ 12597439 (+)
kcnc4 kcnc4,LOC107731196 coding upstream 191046 12478618 ~ 12509666 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 74425 12775926 ~ 12783157 (+)
dclre1b dclre1b coding downstream 90715 12792216 ~ 12798367 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding downstream 214937 12916438 ~ 12921186 (+)
c8h1orf194 c5h1orf194 coding downstream 276526 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 283926 12985427 ~ 12994779 (+)
LOC117597859 NA non-coding upstream 167454 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 474350 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 483498 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 982827 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 1148681 11548962 ~ 11552031 (+)
G131605 NA non-coding downstream 11124 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 107622 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 235803 12937304 ~ 12941456 (+)
G131721 NA non-coding downstream 301894 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 320715 13022216 ~ 13023846 (+)
rbm15 rbm15,LOC107731203 other upstream 96007 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 470711 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 704860 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 986680 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1003921 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1003665 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1188903 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1248436 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1620671 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2238800 14940301 ~ 14982884 (+)

Expression


Co-expression Network