G133635


Basic Information

Item Value
gene id G133635
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16042840 ~ 16043039 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157873
ACAGCAGTGAATATCCTGTAGTCCTCTATATGATTCAGAATCAGGCATATGAAACTGCTTTTCAGTACAGAATCTCTACAGATCCTCCAGTATCACTggatgctctgggtaatgttctgcttggaaaccttgggtcctggcattcatctagttttattttgacacatacaacctacctaaacattgttgcaggcCAAgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157873 True 200 lncRNA 0.41 1 16042840 16043039

Neighbor

gene id symbol gene type direction distance location
mrps27 mrps27 coding upstream 693 16034502 ~ 16042147 (+)
znf366 znf366,LOC108430334,LOC107573350 coding upstream 13481 16024372 ~ 16029359 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding upstream 31941 16005482 ~ 16010899 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding upstream 39529 15996325 ~ 16003311 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding upstream 115194 15923290 ~ 15927646 (+)
ptger4a LOC108265018 coding downstream 11881 16054920 ~ 16059663 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding downstream 29735 16072774 ~ 16085108 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding downstream 67333 16110372 ~ 16124577 (+)
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding downstream 85147 16128186 ~ 16158486 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 181575 16224614 ~ 16231225 (+)
G133617 NA non-coding upstream 70731 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 401882 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 436501 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 616468 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 641078 15401446 ~ 15401762 (+)
G133721 NA non-coding downstream 121647 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 128146 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 129251 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 287541 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 396227 16439266 ~ 16440523 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 24022 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 658016 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1059956 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1062936 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1719390 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 359709 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 537218 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 673094 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 816937 16859976 ~ 16868768 (+)
G134341 NA other downstream 1253072 17296111 ~ 17296883 (+)

Expression


Co-expression Network