G133890


Basic Information

Item Value
gene id G133890
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16439266 ~ 16440523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158165
AGGCATTCAGAGATGCTAGCATTTGCCCTGTGCATTAACAATGTACACCTCaaggaatatttaaaattacaattacaaaaagctgaggaagaaacattttaacacacaatttACACTTAAAAAATATAAGTTATATTCATATACAATGGTATGTTTCCTAATGCATACACAGATATACAGCAAGTTTGTATTTAccttttacatacagtatatcgcTCAAGTCcacatgtgtgcacacacaaagCATGTGAATCTTCAAAGTGGTTAACAGAGCATGAAAGGGTTTTTTCCTCATAAGATAAAACCTTGCAGGCTCTTGCATTATTACCTAACAACCCATATTGTGTGGAGAAACTCTACTctaatacaatatttaatatattaatttaaaaaaaaaaaaaagagagagagagaaacaagtaaacaaaaaacTTAACACACTGAAATTGTCTCCTTATCCATGTTAGTACAACTCCTCTTTACCCTGGTTCCTGAATTGTGGTGTTATACATCAATGCAGAGCCAGATTACAGCCAGACTGACTAAAGATATACACAAGCTTGttaaaaatggctttttaaATTGATACCTTATggccaatctggccattttcagAGATTCATAATGAGTTGCTGTCCTATGGGTTTGCTATTGGTATCATGACTTCTTAGAGTCCTACCTTGTCTCAGGTCAGATAGGCCTCTCCTGGCATAATGATGCAATTTTTCATGATCATCTCCACACATCTCCCTCCTGGAACAATGTTAATATTCTCACGGGTTAATGTCATTGCTACTCATTTTTATATTACGTCTTGGTCAAAAAGGGTTACTGCATGCTATGTTTATAATGAGAGCACTACAAGATTCAACGGATTGGTCTAACCCATCATAAAACAATTCcaattgttttaatatttataatttttctcattttaaatggTTTGCATGAAGCTGTAAAAGCCAGAGTGAGACAAGATATGTTCAAATCCAATGAAGAGGATCAGGGTTTGGTCCTtggcaaagaaatgaaaactttttgcCCATCCTGCCAGCAGGAATCAATGACCATTCTAATGAAGAGGACAAGTCGAGCACTGCAGTCACATCAGTCTGTGTACTCAGCAACGATAGACAGTAGGACAGTGATGTCATCTGGCTTTCCTCCTATAGAGAAATAGGGCATTTATAGAAGCAAAGCTGCATTAgcaaacactgaataaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158165 True 1226 lncRNA 0.36 2 16439266 16440523

Neighbor

gene id symbol gene type direction distance location
rad9b rad9b coding upstream 182 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 41641 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 64138 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 67525 16355696 ~ 16371741 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding upstream 85709 16328742 ~ 16353557 (+)
cux2b cux2 coding downstream 20035 16460558 ~ 16578689 (+)
LOC113524948 NA coding downstream 597298 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 620535 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 908793 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 970585 17411108 ~ 17449062 (+)
G133842 NA non-coding upstream 77017 16330580 ~ 16362249 (+)
G133724 NA non-coding upstream 266733 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 267766 16171185 ~ 16171500 (+)
G133721 NA non-coding upstream 268669 16164686 ~ 16170597 (+)
G133635 NA non-coding upstream 396227 16042840 ~ 16043039 (+)
LOC117597830 NA non-coding downstream 202967 16643490 ~ 16663314 (+)
LOC113533561 NA non-coding downstream 511025 16951548 ~ 16974937 (+)
G134230 NA non-coding downstream 524311 16964834 ~ 16965057 (+)
G134238 NA non-coding downstream 551244 16991767 ~ 16991967 (+)
G134241 NA non-coding downstream 575228 17015751 ~ 17016056 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 19757 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 420448 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 1054442 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1456382 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1459362 14979833 ~ 14979904 (+)
mtmr3 mtmr3,LOC107699659 other downstream 139734 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 275610 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 419453 16859976 ~ 16868768 (+)
G134341 NA other downstream 855588 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1590452 18030975 ~ 18048889 (+)

Expression


Co-expression Network