LOC117597830


Basic Information

Item Value
gene id LOC117597830
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16643490 ~ 16663314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578590.1
aaaaaaaaatttgctgtCTCCCGCCTGTTTCCATCCAATTGGCCTTTTACCGATAAAATGGTGTGCGTGATGACGTCAcccttaaacaaacaaacaaaaaactgtcTCTGATGCAAGTTTTGGTGTATCTCAAAAGAAATCTGCCCTTGAGCCGTTTCCATGCATAATTTTGTGTATATCGCAAATTGTGCACATTTTGCGTCCCGCATGTCCTCAAATCTTTGTACAGTGGAGAGTACTGAGACAATGAAACTGGCCAGcttactttcattttaatttaacaaataattGCAATTGCACGAAATATCAGAAAACGACGTCAGAATCGAGCAGGTGCTCATCTGACAGGGCTCCAAGTAACCTTCGTCAAATTTATGCGACGAAGCCCATGTGTCTgggaggtggtggtggagaaCTGCACCCATCGCAGGACCTGAAAAGACTGCCATCGCGCTGTTCAAGCTGGCGACCTGCGCCACAGAGTAGTGGGGAAAACTTTCGGCTGTCTCTGTATTTCTCGAGCCCTGCGTTCAGCCTGGttcttctcttcctccagtGCCGTCCTCCAGCTCTCCCACTGCCTCTCCTTCTCCAATAGCTCGTCATTCAGAGTCTCCAGCTCTAGCACCTGCTCTTCCAGCATGCCACTTCTCTGCGCAGGCGATCCACCTCTTGGCTAAGCTGCAGTCTCTCCTCATTCTCGTCAGTGGCTTCATCCAGCTGCTTGGAAAGGTAGAAGTTCTGCCTGTTTAACTCTGCATTTTCCTGTGTCAGCTGAGTCAACTGCTCCTCCAGGAGCTCTTTATCAGCCAAGTCTACCTTCATCTGGGTCTCCAAAACCTTGTCAACATAATGTACAATGAGTCTCCATGCGCTGGGCTGTGGCTTGCGTTTCACGCAAGTTCTCCTCCAATTCCTGTAAATTGAAGAACAAGATACATTAATTCCACTTTATGGTTATGATAGAACCCCAATAGTGGTGTAATCCACCCAACCCCTCCAGGGGCTTAAGGGGCCTAGCCCAAtaatgttccagcatgacaattcccCTGTGCACATATCAACGTCCACAAAGACACAGTTTGCCaaagctggagtggaagaactcgagtggcctgcatggagccctgacctcaaccccactgagcacttttaggatgaactggaatgctgactatGCCTGAGGCCTTCTTGCCCTATATcagagcctgacctcactaatgttcttgtagctgaatgggcaaatctccacagccacattcagattttgtgccaaaataaattggtat
>XR_004578591.1
aaaaaaaaatttgctgtCTCCCGCCTGTTTCCATCCAATTGGCCTTTTACCGATAAAATGGTGTGCGTGATGACGTCAcccttaaacaaacaaacaaaaaactgtcTCTGATGCAAGTTTTGGTGTATCTCAAAAGAAATCTGCCCTTGAGCCGTTTCCATGCATAATTTTGTGTATATCGCAAATTGTGCACATTTTGCGTCCCGCATGTCCTCAAATCTTTGTACAGTGGAGAGTACTGAGACAATGAAACTGGCCAGcttactttcattttaatttaacaaataattGCAATTGCACGAAATATCAGAAAACGACGTCAGAATCGAGCAGGTGCTCATCTGACAGGGCTCCAAGTAACCTTCGTCAAATTTATGCGACGAAGCCCATGTGTCTgggaggtggtggtggagaaCTGCACCCATCGCAGGACCTGAAAAGACTGCCATCGCGCTGTTCAAGCTGGCGACCTGCGCCACAGAGTAGTGGGGAAAACTTTCGGCTGTCTCTGTATTTCTCGAGCCCTGCGTTCAGCCTGGttcttctcttcctccagtGCCGTCCTCCAGCTCTCCCACTGCCTCTCCTTCTCCAATAGCTCGTCATTCAGAGTCTCCAGCTCTAGCACCTGCTCTTCCAGCATGCCACTTCTCTGCGCAGGCGATCCACCTCTTGGCTAAGCTGCAGTCTCTCCTCATTCTCGTCAGTGGCTTCATCCAGCTGCTTGGAAAGGTAGAAGTTCTGCCTGTTTAACTCTGCATTTTCCTGTGTCAGCTGAGTCAACTGCTCCTCCAGTGGTCTCCTCTAGCTCAGTTTTGGCCTGCTGTAACTGGCTTTCCAAGGCATGGCGTGTAGCCTGCAGGCTGCTGATCTGAGACTCTCTCTCCTGTAATGACAGTGTCAGCTCTGACACTTGCCGCTTTAAATCCAGCTTCTGCTCCTCATGTTCCAGGCCGATCTAAAGAGGAGCTCTTTATCAGCCAAGTCTACCTTCATCTGGGTCTCCAAAACCTTGTCAACATAATGTACAATGAGTCTCCATGCGCTGGGCTGTGGCTTGCGTTTCACGCAAGTTCTCCTCCAATTCCTGTAAATTGAAGAACAAGATACATTAATTCCACTTTATGGTTATGATAGAACCCCAATAGTGGTGTAATCCACCCAACCCCTCCAGGGGCTTAAGGGGCCTAGCCCAAtaatgttccagcatgacaattcccCTGTGCACATATCAACGTCCACAAAGACACAGTTTGCCaaagctggagtggaagaactcgagtggcctgcatggagccctgacctcaaccccactgagcacttttaggatgaactggaatgctgactatGCCTGAGGCCTTCTTGCCCTATATcagagcctgacctcactaatgttcttgtagctgaatgggcaaatctccacagccacattcagattttgtgccaaaataaattggtat
>XR_004578592.1
aaaaaaaaatttgctgtCTCCCGCCTGTTTCCATCCAATTGGCCTTTTACCGATAAAATGGTGTGCGTGATGACGTCAcccttaaacaaacaaacaaaaaactgtcTCTGATGCAAGTTTTGGTGTATCTCAAAAGAAATCTGCCCTTGAGCCGTTTCCATGCATAATTTTGTGTATATCGCAAATTGTGCACATTTTGCGTCCCGCATGTCCTCAAATCTTTGTACAGTGGAGAGTACTGAGACAATGAAACTGGCCAGcttactttcattttaatttaacaaataattGCAATTGCACGAAATATCAGAAAACGACGTCAGAATCGAGCAGGTGCTCATCTGACAGGGCTCCAAGTAACCTTCGTCAAATTTATGCGACGAAGCCCATGTGTCTgggaggtggtggtggagaaCTGCACCCATCGCAGGACCTGAAAAGACTGCCATCGCGCTGTTCAAGCTGGCGACCTGCGCCACAGAGTAGTGGGGAAAACTTTCGGCTGTCTCTGTATTTCTCGAGCCCTGCGTTCAGCCTGGttcttctcttcctccagtGCCGTCCTCCAGCTCTCCCACTGCCTCTCCTTCTCCAATAGCTCGTCATTCAGAGTCTCCAGCTCTAGCACCTGCTCTTCCAGCATGCCACTTCTCTGCGCAGGCGATCCACCTCTTGGCTAAGCTGCAGTCTCTCCTCATTCTCGTCAGTGGCTTCATCCAGCTGCTTGGAAAGGTAGAAGTTCTGCCTGTTTAACTCTGCATTTTCCTGTGTCAGCTGAGTCAACTGCTCCTCCAGTGGTCTCCTCTAGCTCAGTTTTGGCCTGCTGTAACTGGCTTTCCAAGGCATGGCGTGTAGCCTGCAGGCTGCTGATCTGAGACTCTCTCTCCTGTAATGACAGTGTCAGCTCTGACACTTGCCGCTTTAAATCCAGCTTCTGCTCCTCATGTTCCAGGCCGATCTAAAGAGGAGCTCTTTATCAGCCAAGTCTACCTTCATCTGGGTCTCCAAAACCTTGTCAACATAATATGAGTCTCCATGCGCTGGGCTGTGGCTTGCGTTTCACGCAAGTTCTCCTCCAATTCCTGTAAATTGAAGAACAAGATACATTAATTCCACTTTATGGTTATGATAGAACCCCAATAGTGGTGTAATCCACCCAACCCCTCCAGGGGCTTAAGGGGCCTAGCCCAAtaatgttccagcatgacaattcccCTGTGCACATATCAACGTCCACAAAGACACAGTTTGCCaaagctggagtggaagaactcgagtggcctgcatggagccctgacctcaaccccactgagcacttttaggatgaactggaatgctgactatGCCTGAGGCCTTCTTGCCCTATATcagagcctgacctcactaatgttcttgtagctgaatgggcaaatctccacagccacattcagattttgtgccaaaataaattggtat
>XR_004578593.1
aaaaaaaaatttgctgtCTCCCGCCTGTTTCCATCCAATTGGCCTTTTACCGATAAAATGGTGTGCGTGATGACGTCAcccttaaacaaacaaacaaaaaactgtcTCTGATGCAAGTTTTGGTGTATCTCAAAAGAAATCTGCCCTTGAGCCGTTTCCATGCATAATTTTGTGTATATCGCAAATTGTGCACATTTTGCGTCCCGCATGTCCTCAAATCTTTGTACAGTGGAGAGTACTGAGACAATGAAACTGGCCAGcttactttcattttaatttaacaaataattGCAATTGCACGAAATATCAGAAAACGACGTCAGAATCGAGCAGGTGCTCATCTGACAGGGCTCCAAGTAACCTTCGTCAAATTTATGCGACGAAGCCCATGTGTCTgggaggtggtggtggagaaCTGCACCCATCGCAGGACCTGAAAAGACTGCCATCGCGCTGTTCAAGCTGGCGACCTGCGCCACAGAGTAGTGGGGAAAACTTTCGGCTGTCTCTGTATTTCTCGAGCCCTGCGTTCAGCCTGGttcttctcttcctccagtGCCGTCCTCCAGCTCTCCCACTGCCTCTCCTTCTCCAATAGCTCGTCATTCAGAGTCTCCAGCTCTAGCACCTGCTCTTCCAGCATGCCACTTCTCTGCGCAGGCGATCCACCTCTTGGCTAAGCTGCAGTCTCTCCTCATTCTCGTCAGTGGCTTCATCCAGCTGCTTGGAAAGGTAGAAGTTCTGCCTGTTTAACTCTGCATTTTCCTGTGTCAGCTGAGTCAACTGCTCCTCCAGATGAGTCTCCATGCGCTGGGCTGTGGCTTGCGTTTCACGCAAGTTCTCCTCCAATTCCTGTAAATTGAAGAACAAGATACATTAATTCCACTTTATGGTTATGATAGAACCCCAATAGTGGTGTAATCCACCCAACCCCTCCAGGGGCTTAAGGGGCCTAGCCCAAtaatgttccagcatgacaattcccCTGTGCACATATCAACGTCCACAAAGACACAGTTTGCCaaagctggagtggaagaactcgagtggcctgcatggagccctgacctcaaccccactgagcacttttaggatgaactggaatgctgactatGCCTGAGGCCTTCTTGCCCTATATcagagcctgacctcactaatgttcttgtagctgaatgggcaaatctccacagccacattcagattttgtgccaaaataaattggtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578590.1 False 1289 lncRNA 0.47 5 16643490 16663314
XR_004578591.1 True 1460 lncRNA 0.48 6 16643490 16663314
XR_004578592.1 False 1455 lncRNA 0.48 6 16643490 16663314
XR_004578593.1 False 1225 lncRNA 0.48 4 16643490 16663314

Neighbor

gene id symbol gene type direction distance location
cux2b cux2 coding upstream 64801 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 204406 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 245865 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 268362 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 271749 16355696 ~ 16371741 (+)
LOC113524948 NA coding downstream 374507 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 397744 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 686002 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 747794 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 948072 17611386 ~ 17621646 (+)
G133890 NA non-coding upstream 202967 16439266 ~ 16440523 (+)
G133842 NA non-coding upstream 281241 16330580 ~ 16362249 (+)
G133724 NA non-coding upstream 470957 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 471990 16171185 ~ 16171500 (+)
G133721 NA non-coding upstream 472893 16164686 ~ 16170597 (+)
LOC113533561 NA non-coding downstream 288234 16951548 ~ 16974937 (+)
G134230 NA non-coding downstream 301520 16964834 ~ 16965057 (+)
G134238 NA non-coding downstream 328453 16991767 ~ 16991967 (+)
G134241 NA non-coding downstream 352437 17015751 ~ 17016056 (+)
G134242 NA non-coding downstream 352940 17016254 ~ 17016534 (+)
mtmr3 mtmr3,LOC107699659 other upstream 21724 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 223981 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 624672 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 1258666 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1660606 14940301 ~ 14982884 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 52819 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 196662 16859976 ~ 16868768 (+)
G134341 NA other downstream 632797 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1367661 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1772871 18436185 ~ 18681932 (+)

Expression


Co-expression Network