emilin3a (LOC108265066)


Basic Information

Item Value
gene id emilin3a
gene name LOC108265066
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13523721 ~ 13541674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924721.2
TCCAGAGCATCAACACTACAAATGGGCATTTGATGCATTGCATATTGTTAGGACAATCCTGAACTTCTTTTTGGTTATTGGTCTTTCTTTGGATTCATCACTTTGCTGAAGATGCTGTGGCTAGATTTCCTGAGCCCACTCATTTTTCTGAGTGCTAGTATAGCTGTTACAAATGCTTTTGCGGCTTTCCACTCCATGCCCAACCGTTTCAGCTTCTACAAGTCAGGAGCCAATCCTCATTATAGTTCTGGCAAACCCACTGCAAGACACAAAAACCACTGTGCATATGTAGTGGAAAAGAGTGTTTCCTACACTGTTCAGGATGGTGCAGCTCCTTATGTGAAGGCAGAGTACAAAAAATGTGGCTGGGGGAAGAAGTGTCCAGCACTTAGGTACCGGATGCTCTACAAGCCAGTGTTTAAAGTGGCATACAAGACAATGACAGAGTTGGAGTGGCGTTGTTGTCCTGGATTCACCGGTGTTGGTTGTAACATTGGACCTACCGCTTATGGAATGAAAGCAATGCCCCCTTTCAAGGGTCATGTGCCATCCTACAAAGGTCCTATGCCATCTCATAAAGGTCCACAGCTATCCATTAAAGGTCCCCTATCTTCTTACAAAGGCTCTATGCCACCTTTCAAGGGCCCAATATCTGCCTTCAAAGGACATATGACCTCTTATAATGGCCCAGTAAATGCTTATGAAGAGCGAGTGCCTTTCCACAAAGGTCCAATGCCTCTATTTCAGGGCTCAATGTCCCAACCCAACTATAACAGAAACCTCTGGAATCAACCCTTGACACCCTCTAACATAATGGATGAATATCCTGACCCTAATGCTGCACCATCTTATCCAGAAACTTCATTTGAGCCTTATCAGGAGCCTGAAACAGATCATCCTGATACAGTGCTGGAACAACACAACCCTCTGACTAATGATCAAGATTCTGTACATGATCCTATTTCAGATGATCATGAACCAATAACAAACTACCAGGATCCCATACCAGATCACCAACAGTCAATTCCACATCCAGAGACAAAGCCGCTTCCTGAAACACAGGCATCTTCGGGTGATAGTGAGGTGAATCAGGCTGTTGAAGAGAACAGTGTCAGAGTTGAACGTTTAAATCAGATGGAAGAGGATGTACAGCGACTTTCACTTGGTCTTGAGACGCTTCGTGCTAAAGTGACCAGCTTAGAAGACCACCTACGTGCCTCCCTCCGGGAAGACGCAAACCGCATGCTCTCTACCCTTCTGTCTGAAGCTTCAGTTCCCATAGCTGCTGCATCTCAGGACATGACTATTGGTTTTGGAGACCTGCCTGGGGGAGCACCAGATATAGAGGGCTCAGATGCCATAGGGCAGTTCCCAAACCTGGGTGAGTTGGCTGAAAAGGTGGCACAGCTGCATGCTGAGGTACTGGCTAAGAGCACAGATCTTGTAGAGTTAAAAAAGACAGTACTGGACCATGAGGAGACCCTTCAGAGGTTGCCTGGTGGGGCACTGAATCTCACAGATTCTCAACAAGCCCTAGAGACACTGCTGGAAACCAAACTTAGTAAGGCAGGAGCAGCTGTCCTAGGAGAGTTTGACAAACGTGTGGAGACTGCAGAGCAGCGTTGTGAGGATCGGGTGATGGAGGTGCATCTCCAGTGCAAGAAAGAGATCATGGAAGGACAGGAACAGCTGGAACAGGTTGTAAACAGTAGTCTGACAGCCTTGAAAATTGAGCTTGCAAACATTTATGCTGAGCACCAAGGTCTAGAATCTGATGATGCTTGCTGCACGGCGATGTCTGGCATGACAGAAAGGCTGGTTCTTCTAGAGCAGTCAATGGATGGCTTGAACCAGTCCCAAGTGCACCTTCAAGTTGAACTAGGTGGCCACAAGGACCATGTAGAGGGCATGGTAGAAGGTAGACTGGCCTATGTAGAGTCACTTTTGAGTACAACAGAGAAGGAACAAGGATGTACAGGTGAAAGAACAGCTGGTATCCTAGAGGACTGCCTGGAGGAAAAGATAAAGGATCTTGAAATTCGTTTGTTTGCTGCTATGGAGGAACTGGCTAATGCTACATCTACAGTTCTGGTTGAATGTCAGACAGTGCCCACACTAGACACAGAAGTCAAGTCCCTCAAAAAGAGGGTAGAAGTAGATCTGGACCTCATTCAGAAGCAGCTTAGCTCCCTTGAACTTGTCTGCACTTCCTCTTGTGCTCCAGAACCAGTTCTTACTGGATATGCTGAACCACTGATAACACTGGAAGAGAAAGACaagaaaacacatgaaaatcTTAATGGGCAGCTGAgtgcacagacagaaagactAGACCAACTGAATGCCACTCTAAATTCACTGCTCACACAGTTGACTGAGAGACAAGAAGAGAAGGAGCTTCAAGGTGAGGTAACCCTGCTGAAGGTGAGCATGCACTCTGTCAATCACACACTTTGTGGACTAAAAGACTCATTTGGGAAGGTGGTGCGTGAAGTTGGACAAACTAACCTTACCTGGCAAGAGCGAGAGGAGAGGCTAGCTCAGCAGGTTAAGGGTGTGGTGCAGTTGGTTGGACGGCAGGCTTCTATGTTGGGTGCTGGGGAGAGGAGGCTGACTCGTCTGAAGGGTGAGTTGCAGGATCTACGGCGCAGGTTGGCTTCAGAGATGCAGACCTGCCACTCAACTGCTCTGGGCGTCCAGAAAGAGGTGACTGATGTAGGGGGACGTGTGGCCCGTGTAGAAGGTCAGTGTGGTGGCTTGTCACAGCTGGCTGAAGACTTGGAGCTGATCCGAGGAGAACTGGAGAAATATTCAGATGGATATTTTTCCCAGGTCAACAGTACCCTTGTCAGTCATTCCCTCCAGCTATCTGAGCTTAGAGATGGACTGAAAACCTGCACTAAGTCCTCTGGGTTAACAGGGGACCATGTCGTTGCAGTAACTCAGCCATCGGAAGAACAACATACTGTTGAACCACCTAAACCTAGAGGAGACCAGTTTATAGATCCCACACAGGTTTAAGATGACTAAGAACTCAGGAAAGCTCCATAATATGGGGAAATACATTTAAAGACTACTCACAGGCCAAGCagcatatttaattaatttttacttCTTGGtatatattaatctttatacTTTTTGTACTGATTGAATtgtgtatttcatttcatttctgtgaAGTGTGTAATACTTGATACTGAACATTAATGTGTCTGTAATGTACTGGGActtttgtttttcagggttttttttatatacagagtCATTCTTATAAATACTAAAGTTGTTTTttctaaatgcttttttttattgcaacatagagaattttaaataaaaaaaatgaaatgtt
>XM_034306380.1
GGAATAAACAAGCTTTCTTTAACACTGGGTCATGTGTTGAAGTATTTCCTGATCTTGCAAAATAAGGTTTAATTTACTGCCAGAAAAgATGAGATGATGCCCCTTTCTGATGATGAGTCAGTTATGAAACCACTGTGCATATGTAGTGGAAAAGAGTGTTTCCTACACTGTTCAGGATGGTGCAGCTCCTTATGTGAAGGCAGAGTACAAAAAATGTGGCTGGGGGAAGAAGTGTCCAGCACTTAGGTACCGGATGCTCTACAAGCCAGTGTTTAAAGTGGCATACAAGACAATGACAGAGTTGGAGTGGCGTTGTTGTCCTGGATTCACCGGTGTTGGTTGTAACATTGGACCTACCGCTTATGGAATGAAAGCAATGCCCCCTTTCAAGGGTCATGTGCCATCCTACAAAGGTCCTATGCCATCTCATAAAGGTCCACAGCTATCCATTAAAGGTCCCCTATCTTCTTACAAAGGCTCTATGCCACCTTTCAAGGGCCCAATATCTGCCTTCAAAGGACATATGACCTCTTATAATGGCCCAGTAAATGCTTATGAAGAGCGAGTGCCTTTCCACAAAGGTCCAATGCCTCTATTTCAGGGCTCAATGTCCCAACCCAACTATAACAGAAACCTCTGGAATCAACCCTTGACACCCTCTAACATAATGGATGAATATCCTGACCCTAATGCTGCACCATCTTATCCAGAAACTTCATTTGAGCCTTATCAGGAGCCTGAAACAGATCATCCTGATACAGTGCTGGAACAACACAACCCTCTGACTAATGATCAAGATTCTGTACATGATCCTATTTCAGATGATCATGAACCAATAACAAACTACCAGGATCCCATACCAGATCACCAACAGTCAATTCCACATCCAGAGACAAAGCCGCTTCCTGAAACACAGGCATCTTCGGGTGATAGTGAGGTGAATCAGGCTGTTGAAGAGAACAGTGTCAGAGTTGAACGTTTAAATCAGATGGAAGAGGATGTACAGCGACTTTCACTTGGTCTTGAGACGCTTCGTGCTAAAGTGACCAGCTTAGAAGACCACCTACGTGCCTCCCTCCGGGAAGACGCAAACCGCATGCTCTCTACCCTTCTGTCTGAAGCTTCAGTTCCCATAGCTGCTGCATCTCAGGACATGACTATTGGTTTTGGAGACCTGCCTGGGGGAGCACCAGATATAGAGGGCTCAGATGCCATAGGGCAGTTCCCAAACCTGGGTGAGTTGGCTGAAAAGGTGGCACAGCTGCATGCTGAGGTACTGGCTAAGAGCACAGATCTTGTAGAGTTAAAAAAGACAGTACTGGACCATGAGGAGACCCTTCAGAGGTTGCCTGGTGGGGCACTGAATCTCACAGATTCTCAACAAGCCCTAGAGACACTGCTGGAAACCAAACTTAGTAAGGCAGGAGCAGCTGTCCTAGGAGAGTTTGACAAACGTGTGGAGACTGCAGAGCAGCGTTGTGAGGATCGGGTGATGGAGGTGCATCTCCAGTGCAAGAAAGAGATCATGGAAGGACAGGAACAGCTGGAACAGGTTGTAAACAGTAGTCTGACAGCCTTGAAAATTGAGCTTGCAAACATTTATGCTGAGCACCAAGGTCTAGAATCTGATGATGCTTGCTGCACGGCGATGTCTGGCATGACAGAAAGGCTGGTTCTTCTAGAGCAGTCAATGGATGGCTTGAACCAGTCCCAAGTGCACCTTCAAGTTGAACTAGGTGGCCACAAGGACCATGTAGAGGGCATGGTAGAAGGTAGACTGGCCTATGTAGAGTCACTTTTGAGTACAACAGAGAAGGAACAAGGATGTACAGGTGAAAGAACAGCTGGTATCCTAGAGGACTGCCTGGAGGAAAAGATAAAGGATCTTGAAATTCGTTTGTTTGCTGCTATGGAGGAACTGGCTAATGCTACATCTACAGTTCTGGTTGAATGTCAGACAGTGCCCACACTAGACACAGAAGTCAAGTCCCTCAAAAAGAGGGTAGAAGTAGATCTGGACCTCATTCAGAAGCAGCTTAGCTCCCTTGAACTTGTCTGCACTTCCTCTTGTGCTCCAGAACCAGTTCTTACTGGATATGCTGAACCACTGATAACACTGGAAGAGAAAGACaagaaaacacatgaaaatcTTAATGGGCAGCTGAgtgcacagacagaaagactAGACCAACTGAATGCCACTCTAAATTCACTGCTCACACAGTTGACTGAGAGACAAGAAGAGAAGGAGCTTCAAGGTGAGGTAACCCTGCTGAAGGTGAGCATGCACTCTGTCAATCACACACTTTGTGGACTAAAAGACTCATTTGGGAAGGTGGTGCGTGAAGTTGGACAAACTAACCTTACCTGGCAAGAGCGAGAGGAGAGGCTAGCTCAGCAGGTTAAGGGTGTGGTGCAGTTGGTTGGACGGCAGGCTTCTATGTTGGGTGCTGGGGAGAGGAGGCTGACTCGTCTGAAGGGTGAGTTGCAGGATCTACGGCGCAGGTTGGCTTCAGAGATGCAGACCTGCCACTCAACTGCTCTGGGCGTCCAGAAAGAGGTGACTGATGTAGGGGGACGTGTGGCCCGTGTAGAAGGTCAGTGTGGTGGCTTGTCACAGCTGGCTGAAGACTTGGAGCTGATCCGAGGAGAACTGGAGAAATATTCAGATGGATATTTTTCCCAGGTCAACAGTACCCTTGTCAGTCATTCCCTCCAGCTATCTGAGCTTAGAGATGGACTGAAAACCTGCACTAAGTCCTCTGGGTTAACAGGGGACCATGTCGTTGCAGTAACTCAGCCATCGGAAGAACAACATACTGTTGAACCACCTAAACCTAGAGGAGACCAGTTTATAGATCCCACACAGGTTTAAGATGACTAAGAACTCAGGAAAGCTCCATAATATGGGGAAATACATTTAAAGACTACTCACAGGCCAAGCagcatatttaattaatttttacttCTTGGtatatattaatctttatacTTTTTGTACTGATTGAATtgtgtatttcatttcatttctgtgaAGTGTGTAATACTTGATACTGAACATTAATGTGTCTGTAATGTACTGGGActtttgtttttcagggttttttttatatacagagtCATTCTTATAAATACTAAAGTTGTTTTttctaaatgcttttttttattgcaacatagagaattttaaataaaaaaaatgaaatgtt

Function

NR:

description
EMILIN-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924721.2 True 3352 mRNA 0.45 4 13537411 13541674
XM_034306380.1 False 3206 mRNA 0.45 5 13523721 13541674

Neighbor

gene id symbol gene type direction distance location
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 33722 13464131 ~ 13489999 (+)
tpd52l2a tpd52l2 coding upstream 137336 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 154102 13369548 ~ 13369619 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding upstream 171118 13309890 ~ 13352603 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 298402 13214466 ~ 13225319 (+)
magixa LOC108265805,LOC108437579 coding downstream 74930 13616604 ~ 13688929 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 281424 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 296664 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 331872 13873546 ~ 13877960 (+)
lrif1 lrif1 coding downstream 337437 13879111 ~ 13885667 (+)
G132081 NA non-coding upstream 23038 13500389 ~ 13500683 (+)
G131947 NA non-coding upstream 83991 13437922 ~ 13439730 (+)
G131948 NA non-coding upstream 86763 13435501 ~ 13436958 (+)
G131987 NA non-coding upstream 88427 13433917 ~ 13435294 (+)
G131980 NA non-coding upstream 101507 13420705 ~ 13422214 (+)
G132115 NA non-coding downstream 28718 13570392 ~ 13570972 (+)
G132139 NA non-coding downstream 250188 13791862 ~ 13792709 (+)
G132136 NA non-coding downstream 251482 13793156 ~ 13794305 (+)
G132138 pdzd4,LOC108437581 non-coding downstream 252908 13794582 ~ 13799616 (+)
G132357 NA non-coding downstream 468829 14010503 ~ 14013621 (+)
rbm15 rbm15,LOC107731203 other upstream 919016 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1293720 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1527869 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1809689 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1826930 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 163492 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 348730 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 408263 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 780498 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1398627 14940301 ~ 14982884 (+)

Expression


Co-expression Network