AMCG00000729 (satb2,LOC107690605,LOC107569722)


Basic Information

Item Value
gene id AMCG00000729
gene name satb2,LOC107690605,LOC107569722
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1668845 ~ 1698573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000729
ATGGAGCGCCGCAGTGAGAGCCCCCGTCTGCGGGACAGTCCAGAGCGCAGGGGTAGCAGCCCCGACCTCACCGCCCCCCCGCCGGGGAAGATGAGCCGCCTGGAGCAGAACGGGAACCCCCCGGGACCGCGCATCCGCCTCAACGGAGCCCCCCTGAGGCCCCTCGGAGgccTGATGATCCCAGTGTTCTGCGTGGTGGAGCAGGCGGACGGCGGGGGGGAGGCGGACGGCCGCGAGGAGCACGGCGAGTTTGTGTTGGTGCGCAAGGACGTGCTGTTCACACACCTGGTGGAGACTGCTCTGCTGGCCCTGGGGTACTCGCACAGCTCCGCCGCCCAGGcccagggcaTCATCAAGGTGGGCCGCTGGAACCCCCTGCCCATCCACTTCCTGACCGACGCCCCCGAGGCCACAGTGGCCGACATGCTGCTGGACGTCTATCACATGGTCACTCTCCGCATCCAGCTGCAGAGGGGCTCGAGGGTCCGGGGAGGGCGGTGGTCACAGGACTCTGGGGTGAGGCTGAGGGGGGTAACTGGCGCTGTGGTGTGGGCTGAGGGGGTAACTGCCGCTGTGTTGCAGCTGTGCCCGGCTGGAAGACCTGCCGTCCGAGCAGTGGAACCATGCCACTgtccagtgtgtgtgagacagaccTGGGTGTCCGGCAGGTGCAGCACGGTGTGCAGCCTCTCGCTGTGCTGGTGCCGGGACTCCTCCTCGTACACCAGGTCCCGGTCCTGCTGCGGGAGGCTCAGGAAGCGCCGGATGGTGCAGAGGTTCTCCCACAGCGTGCGGTTCTCCGGGCTCGGACTCTCCTTCCAGCGCAGCAGCTCACACAGCCAGCcctga
>TU157662
gcTCTGTGTCAGTCCGTGCTCGGGTGCAGCTGCGGGGTGCACAGTGTCGCGCTGGGGTGCTGATCCCGGACACAGCGCGAACCGAACCGAGCCCAGTCCGGTCCAGAGCACCGAGCCAGCCGTTCATCTGTCCCTGTCGCTTTGCTTGTCATCGTCCGCCACCACCGCCACTCTCCCACCCCCCACGCCAGCCTCCACGGCACGTTTTGATGCTGTCTTCCCTTCTCTCCTGCTTGTTCCTGCGAAAGGTGCGAGAGCAGAACCGGGACAGGATCTCTCGTCGCCCCCCCTCCACGGGCCACTCAGAGCCAGAGACACCCTGCCCAGCCCAGGCAGAGGCGCACGGAGAGACGCACGGTCCTGCGGGGAACACGGAAGCCAGGCCAGCCGGACCTTTGGCAACTTTGTTGGTGGGTCAGTGAGTCAGTCCCCCCGGCGGCGGCGCACAGGACAGCGGAGGACTTCGGCGCTTTCCCCCGGTCTCCCCCAGAGAGCCGGAGCGGAGCCGAACCTCTTAAGCCCCGGCTCGGGCCCCTCTCCCCGCACCCCAGCACCCCCTTGTCCCGGAGCGGAGCAGAGAGACAGGCGGACGGGCACGCCGAAGTCCAGCCCTGGATTCAATACTTCTCATCAATGGGCAGAGCCTCCTCGCCAGCCGGCCGCGGTACAGACACTCCATAGCCAGCCCGTACCCTCTGGTGGGAGCCCCCCCTGCTGGCTGGCGGGGGATGGAGCGCCGCAGTGAGAGCCCCCGTCTGCGGGACAGTCCAGAGCGCAGGGGTAGCAGCCCCGACCTCACCGCCCCCCCGCCGGGGAAGATGAGCCGCCTGGAGCAGAACGGGAACCCCCCGGGACCGCGCATCCGCCTCAACGGAGCCCCCCTGAGGCCCCTCGGAGgccTGATGATCCCAGTGTTCTGCGTGGTGGAGCAGGCGGACGGCGGGGGGGAGGCGGACGGCCGCGAGGAGCACGGCGAGTTTGTGTTGGTGCGCAAGGACGTGCTGTTCACACACCTGGTGGAGACTGCTCTGCTGGCCCTGGGGTACTCGCACAGCTCCGCCGCCCAGGcccagggcaTCATCAAGGTGGGCCGCTGGAACCCCCTGCCCATCCACTTCCTGACCGACGCCCCCGAGGCCACAGTGGCCGACATGCTGCTGGACGTCTATCACATGGTCACTCTCCGCATCCAGCTGCAGAGCTGTGCCCGGCTGGAAGACCTGCCGTCCGAGCAGTGGAACCATGCCACTGTGCGCAACGCCTTGAAGGAACTGCTGAAGGAAATGAACCAGAGCACTTTGGCCAAGGAGTGCCCCCTCTCTCAGagtATGATCTCCTCCATCGTGAACAGCACCTACTACGCCAACGTCTCCTCCAGCAAGTGTCAGGAGTTCGGCCGCTGGTACAAGAAGTACAAGAAGATCAAAGG

Function

symbol description
satb2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be located in nucleus. Is expressed in fin; head; nervous system; pharyngeal endoderm; and pronephric duct. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2).

NR:

description
DNA-binding protein SATB2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000729 False 849 mRNA 0.68 5 1685980 1698573
TU157662 True 1429 TUCP 0.66 6 1668845 1696247

Neighbor

gene id symbol gene type direction distance location
AMCG00000725 NA coding upstream 24207 1638355 ~ 1644638 (+)
AMCG00000724 dnajb11 coding upstream 47454 1613837 ~ 1621391 (+)
AMCG00000722 NA coding upstream 74242 1590362 ~ 1594603 (+)
AMCG00000717 NA coding upstream 93406 1554678 ~ 1575439 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding upstream 205208 1452612 ~ 1463637 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding downstream 6221 1704794 ~ 1710396 (+)
AMCG00000738 NA coding downstream 93835 1792408 ~ 1798431 (+)
AMCG00000737 NA coding downstream 126296 1824869 ~ 1830750 (+)
AMCG00000736 NA coding downstream 171006 1869579 ~ 1873692 (+)
AMCG00000735 vps16,LOC101164202,LOC106575790 coding downstream 176425 1874998 ~ 1885085 (+)
G125756 NA non-coding upstream 46957 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 59635 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 241902 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 340206 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 361510 1304095 ~ 1307335 (+)
G125955 NA non-coding downstream 593262 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 729097 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 859419 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 1067682 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 1172343 2870916 ~ 2885184 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 62814 1599696 ~ 1606031 (+)
G125561 NA other upstream 1265254 339640 ~ 403591 (+)
AMCG00000734 NA other downstream 106834 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3762728 5461301 ~ 5465981 (+)
G127134 NA other downstream 6918626 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8401710 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 10301091 11999664 ~ 12011425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_02167959_02200058 SATB2 coding CI01000009 null 2167363 ~ 2200058 (-)