AMCG00001236 (LOC105905668,LOC108414761)


Basic Information

Item Value
gene id AMCG00001236
gene name LOC105905668,LOC108414761
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20611272 ~ 20676857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001236
ATGGTGCCAAGCAAAAGTCCCAAGCCTCCCGCTCCAGATGGGGCCAAGTCGAACCCCTCCAAACGCCACAGGGATCGCTTAAACTGCGAGCTGGACAAGCTTACCAGCCTCCTCCCCTTCTCGGAGGATGTGAGGGCCCGCTTGGACAAGCTCTCCGTGCTGAGGCTCAGTGTGGGCTACCTGAAGGTCAAGAGCTTCTTCAATGGTGAGTAA
>TU162705
ATCCTTGCATTGCTCTCGGTCCACCTTAAAAAGGCACTTATTCTATATGATTTCCTGAAAGCGTGTTGCACCAATGGCGAGGACCGAGTCTTCCCCGCTGCCGGTCCCAGCCTGTTACAGCGCTCGGCATTGGCCTGAATAAAGTGAAAACAGCCCTAAACTTCTCAAGTCGTGTTTATTTGGGGGCAGTAGAGAGtgacaacttaaaaaaacagaaaggaagaaggaaaattGGTTCTGAGCACGCCATTAATAGCCGCGGTGGAACAGGAAACTTTCCAACAAACTTCTCAGCCCTTTTTTGAGCAGATCTGGATTCGTCCCTGTGGCGAATGGAGCTCTTCCCCGGCGCTTGGATGTGTCAGTTTGCTTGCGAGgagagagaggagcgCTTTGGTGGATACATTTTGGACTCATAGGCGAGGAGAAGGCATCATGTTGTCTAATGCGGGGATCTATGCTGCCAAAAAACGCAAGAAGCCCGTGCAGAAAATTCCCAAGCCTCCCGCTCCAGATGGGGCCAAGTCGAACCCCTCCAAACGCCACAGGGATCGCTTAAACTGCGAGCTGGACAAGCTTACCAGCCTCCTCCCCTTCTCGGAGGATGTGAGGGCCCGCTTGGACAAGCTCTCCGTGCTGAGGCTCAGTGTGGGCTACCTGAAGGTCAAGAGCTTCTTCAATGCTaccatgaagaaaaacaatgtgacGTGGCTGACGGAGAGAGTGGCCACTTTCGGAGGGAATGGGCAGAGCGTTCCGACGATCGATGGCGTCAGCTTCTCGGAAGGGGATCTCCTCCTACAAG

Function

NR:

description
PREDICTED: circadian locomoter output cycles protein kaput-like

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001236 False 213 mRNA 0.58 2 20624934 20628040
TU162705 True 805 TUCP 0.52 4 20611272 20676857

Neighbor

gene id symbol gene type direction distance location
AMCG00001230 NA coding upstream 2369 20603075 ~ 20608903 (+)
AMCG00001227 NA coding upstream 420276 20165005 ~ 20190996 (+)
AMCG00001226 NA coding upstream 459887 20131487 ~ 20151385 (+)
AMCG00001228 NA coding upstream 499687 20106055 ~ 20111585 (+)
AMCG00001219 NA coding upstream 1367761 19231063 ~ 19243511 (+)
AMCG00001234 NA coding downstream 10633 20687490 ~ 20699600 (+)
AMCG00001237 ahr1b,LOC107600975,LOC107586968,LOC107751479,LOC107687868,LOC107653601 coding downstream 31430 20708287 ~ 20714482 (+)
AMCG00001235 NA coding downstream 72945 20749802 ~ 20778646 (+)
AMCG00001240 NA coding downstream 166261 20843118 ~ 20844227 (+)
AMCG00001238 NA coding downstream 170913 20847770 ~ 20856344 (+)
G129756 NA non-coding upstream 14520 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 305415 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 516205 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 829410 19781647 ~ 19781862 (+)
G129695 NA non-coding upstream 829665 19781250 ~ 19781607 (+)
G129904 NA non-coding downstream 564480 21241337 ~ 21241568 (+)
G129961 NA non-coding downstream 732077 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 779162 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 864606 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 874573 21551430 ~ 21554095 (+)
AMCG00001229 NA other upstream 114904 20464363 ~ 20496368 (+)
AMCG00001223 s100b,LOC106574292 other upstream 1118928 19478260 ~ 19492344 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 1469127 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 1721548 18888284 ~ 18889724 (+)
G129442 NA other upstream 2053098 18555151 ~ 18558174 (+)
AMCG00001241 NA other downstream 229514 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 265215 20942072 ~ 20942397 (+)
G129877 NA other downstream 400278 21077135 ~ 21078870 (+)
G129913 NA other downstream 594527 21271384 ~ 21276879 (+)
AMCG00001260 NA other downstream 1294442 21971299 ~ 21992332 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020983 ahr2 coding NC_007133.7 CM002906.2 13046270 ~ 13165186 (-)