RNA id: TU162705


Basic Information

Item Value
RNA id TU162705
length 805
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00001236
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20611272 ~ 20676857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCTTGCATTGCTCTCGGTCCACCTTAAAAAGGCACTTATTCTATATGATTTCCTGAAAGCGTGTTGCACCAATGGCGAGGACCGAGTCTTCCCCGCTGCCGGTCCCAGCCTGTTACAGCGCTCGGCATTGGCCTGAATAAAGTGAAAACAGCCCTAAACTTCTCAAGTCGTGTTTATTTGGGGGCAGTAGAGAGtgacaacttaaaaaaacagaaaggaagaaggaaaattGGTTCTGAGCACGCCATTAATAGCCGCGGTGGAACAGGAAACTTTCCAACAAACTTCTCAGCCCTTTTTTGAGCAGATCTGGATTCGTCCCTGTGGCGAATGGAGCTCTTCCCCGGCGCTTGGATGTGTCAGTTTGCTTGCGAGgagagagaggagcgCTTTGGTGGATACATTTTGGACTCATAGGCGAGGAGAAGGCATCATGTTGTCTAATGCGGGGATCTATGCTGCCAAAAAACGCAAGAAGCCCGTGCAGAAAATTCCCAAGCCTCCCGCTCCAGATGGGGCCAAGTCGAACCCCTCCAAACGCCACAGGGATCGCTTAAACTGCGAGCTGGACAAGCTTACCAGCCTCCTCCCCTTCTCGGAGGATGTGAGGGCCCGCTTGGACAAGCTCTCCGTGCTGAGGCTCAGTGTGGGCTACCTGAAGGTCAAGAGCTTCTTCAATGCTaccatgaagaaaaacaatgtgacGTGGCTGACGGAGAGAGTGGCCACTTTCGGAGGGAATGGGCAGAGCGTTCCGACGATCGATGGCGTCAGCTTCTCGGAAGGGGATCTCCTCCTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 14520 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 114927 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 305415 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 516205 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 829410 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 564480 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 732077 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 779162 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 864606 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 874573 21551430 ~ 21554095 (+) True G129985
AMCG00001230 mRNA upstream 2369 20603075 ~ 20608903 (+) True AMCG00001230
AMCG00001229 mRNA upstream 114904 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001227 mRNA upstream 420276 20165005 ~ 20190996 (+) True AMCG00001227
AMCG00001226 mRNA upstream 459887 20131487 ~ 20151385 (+) True AMCG00001226
AMCG00001228 mRNA upstream 499687 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001234 mRNA downstream 10633 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001237 mRNA downstream 31430 20708287 ~ 20714482 (+) True AMCG00001237
AMCG00001235 mRNA downstream 72945 20749802 ~ 20778646 (+) True AMCG00001235
AMCG00001240 mRNA downstream 166261 20843118 ~ 20844227 (+) True AMCG00001240
AMCG00001238 mRNA downstream 170913 20847770 ~ 20856344 (+) True AMCG00001238
TU162623 other upstream 1121672 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1469127 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1721548 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 2053098 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 2063357 18545893 ~ 18547915 (+) True G129453
TU162792 other downstream 241701 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 265215 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 400278 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 594527 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 2489406 23166263 ~ 23166656 (+) True G130335

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041269 True 7511 mRNA 0.42 11 NC_007133.7 13046270 ~ 13165186 (-)