RNA id: AMCG00001230


Basic Information

Item Value
RNA id AMCG00001230
length 2685
RNA type mRNA
GC content 0.56
exon number 13
gene id AMCG00001230
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20603075 ~ 20608903 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGAAATACATCCCTGACCAGAAGGAGAAAAATGAGAGGCAGTTCCTGCAGGACTTAGACTTCATCTCTGACAGGCTGCAGGAAATCCCCATTAGCGATGTGGTTAAGgCCACTAAGAGCCCTGTGCGTCCCCTGGACCCCAGTCGGCTGACAGGAATGAACTCTGTCCCTGTCCTTACCCCCTCTCTTGCCAACCGTGGCATACAGCCCATGGGGGGACAGGGCCCAGAGTCTTTGTCCCCCCAGCCCTCAGCAGAGGGTCGCCGGTGCTCCCGGCAGGGCGAGAGGATGGAGGCACGAATCATCATCAACGTGTCATTCACGGATGAGGTTCAGCTCAACAAGGCCGATACGGCCTGGAAGCCTAGGATAAAGCAGGCTTCCACAGTGGGTGATGACCCCGAGGTCATTATTACACAGTTACTGATCCGAAAGATGAACAGTATTCTGAACAAGATGACCCCACAGATGTTCCAGCAGTTGATGTGCCAAGTCGACGAGCTGATCATTGACACGGAGCAGCGACTCCAGGCTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATATGCCAATATGTGCCAGTACCTTCTGAGGCTCAAAGTCCAGAGCGCTGACAAGCCGGGAGAGGCGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGACGGAGGACGGTGGAGATGAGGTCTTCGAGATGAAGCAGAAGTTGCTGGATGCATCCTTGGTGGACAAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGCGGCGCGCGCTAGGCAACATCAGGTTCGTTGGGGAGCTGTTCAAGGTGAAGATGCTGACGAGGACCACCATGCATAATTGCATTGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGAAGAGGTCCAAGCCCCATATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCATAGAGAGGAAGACCTCCTCTCGAATCTGCTTCATGCTGCAGGACATCTTGGACCTTAGAAAGGATAACTGGGTGCCCAGGAGGGCTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAAGCGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCTTGATCAAGAAGGACAACCGATGTGGGGGCCCTGGGGGGCCACGCCCTGCAGCTCTCGAGTCTGGACGGGCCAGTTCCAGCGCCCTGAACCGCTGCTCCGCCCTGCAGCAGTCGTCCTCCGCCACTCCTTCCTCCTTACACAGTGATGCATGGAGAGTGCCACCGAGGAGTAGCTCTTGCCGGGATGGCGATGAGTGTAGTAACCTCTTCGAGCGGCCGGAGCGCCATGAGCGTGGCCAGCGCAATCACTCTGAGAGGAGAGGCGCCGGGGATAAGAGCGGCCTGGACAGGATTGCCTTGAAGAAGTCAATGTCCATCATTGGGGAGTATCTCCACCTCAATGACATGAAGTCCTCAGCAGTGGGTCCCTGGTGCTCCCAGCAGGGCGAGAGGAGGGAGAAGCGCAAGGTCATCACCCTGTCATTCTCGGATGAGGTTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTGGAGTAAAGCAGTCTTCCACAGTGGGTGATGACCCCGAGGTCATTATTACCCAGTTACTGATCCGCAAGATGAACAGTATTCTGAACAAGCTGACCCCACAGATGTTCCAGCAGTTGATGTGCCAAGTGGACGAGCTGATCATTGACACGGAGCAGCGACTCCAGGCTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATATGCCAATATGTGCCAGTGCCTTCTGAGGCTCAAAGTCCCGAGCGCTGACAAGCCGGGAGAGACGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGACGGAGGAGGGTGGAGACGAGGTCTTCGAGATGAAGCAGAAGTTGCTGGATGCATCCttggtgGACGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGAAGCGCGCGCTAGGCAACATCAGGTTCGTTGCGGAGCTGTTCAAGTTGAAGATGCTGACGAGGACCACCATGCACAATTGCATCATCGAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGAGGTCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCATAGAGAGGAAGACCTCCTCTCGAATCTGCTTCATGCTGCAGGACGTCTTGGACCTGAGAAAGGATAACTGGGTGCCCAGGAGGGCTGACCACGGTCCAAAGACAATCGACCAGGTTCACAAGGAAGCAGAGCTGGAGGCACACCGTGAGCAGATCAAGGTGCAGCAGCAGCTCTTGATCAAGACGGACAACCGACATAATTCAAACTCCAGCGAAAGTGCCCTGTCGCGCGCCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGCCTTTTGTGAGAACATTAGAAATGGAAGCACCAGTCCTTTTCTGGCGAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 6323 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 106730 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 297218 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 508008 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 821213 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 632434 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 800031 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 847116 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 932560 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 942527 21551430 ~ 21554095 (+) True G129985
AMCG00001229 mRNA upstream 106707 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001227 mRNA upstream 412079 20165005 ~ 20190996 (+) True AMCG00001227
AMCG00001226 mRNA upstream 451690 20131487 ~ 20151385 (+) True AMCG00001226
AMCG00001228 mRNA upstream 491490 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001223 mRNA upstream 1110731 19478260 ~ 19492344 (+) False AMCG00001223
AMCG00001236 mRNA downstream 16031 20624934 ~ 20628040 (+) False AMCG00001236
AMCG00001234 mRNA downstream 78587 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001237 mRNA downstream 99384 20708287 ~ 20714482 (+) True AMCG00001237
AMCG00001235 mRNA downstream 140899 20749802 ~ 20778646 (+) True AMCG00001235
AMCG00001240 mRNA downstream 234215 20843118 ~ 20844227 (+) True AMCG00001240
TU162623 other upstream 1113475 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1460930 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1713351 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 2044901 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 2055160 18545893 ~ 18547915 (+) True G129453
TU162705 other downstream 2369 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 309655 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 333169 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 468232 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 662481 21271384 ~ 21276879 (+) True G129913

Expression Profile