AMCG00014399 (jagn1,jgn1a,LOC106574769,LOC105027989)


Basic Information

Item Value
gene id AMCG00014399
gene name jagn1,jgn1a,LOC106574769,LOC105027989
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13009705 ~ 13015654 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014399
TTTTATGGATCCTAAACAGGAAATGTCGTCATTATGCTCTGGCCAACCCTCGACTGACAGCTGTGTTTCCGATTTGTTCATGCGCGGAGAGACATTTTGAAGCGAAAAGATAAAGGGCATCCCCTCTGTGTTGCGGGTGTAGTttgggaacaaaataaatacaaataataataataatcctgacTTTCGACGCTGTTTTCTAGAAACacctacaaaaatacagtTTTCCTTGTGATCAGCTCTGCACCATGGCTTCACGAGCAGGCCCTCGAGCGGCAGGCACTGATGGAAGTGACTTCCAGCACCGAGAGAGAGTGGCATCGCACTATCAAATGAGTGTGGCCCTGAAGTCTGAGATTCGAAAACTGAACATTGTTCATGTGCTGATTTGGCTCCTTGTGGCAGCGCAGGTCACCGTCAGCTACCTGAACCTGGTGTCTCACGATGTGGTGGCCACCCCCTATCAGTGGGAATACCCCTATTTGCTGAGCATCTTTCCCTCCATCTTCAGCTTTATGTCTCTTCCACGTAACAACATCAGCTACCTGGTCATCTCCATGATCAGCGCCGGGCTGTTCTGTATCGCGCCTCTCATCTACGGGGGAATGGAGATGTTCCCTGTGGCCCAGCAGCTTTACCGACATGGCAAGGCCTACCGCTTTATCTTTGGCTTCTCGGCTGTGTCGGTCATGTACCTGGTGATGGTCATCTCCGTGCAGGTACATGCCTGGCAGATCTACTACAGCAAGAAGCTTCTAGATGCCTGGTTCACCTCCACCcaggacaagaagaagaaatgaGAGGATCTGCAAGTGGAATGGAAGGAGAAtgaacactttctttttttaatttattttttcttaagaaaGAACAACTGCTGCCACAGTAAGGAGTACCATGCAGCTTTTacttcatttgcaccaaaaatCCTTCTCAGCAACTTCTCATCTCCTCCAAGGCCAGAATAAGATGATGTCTATGGGGGGAAAGATGTATGAACCAAGGGGCAACAGTGGGGAACATCaaagcaaagtttttttttgttttaaatatgaccATATACACTCTCTTAAAGAGCTCACTTACTAGGCAGGCAGAATCTGCATTTTAATACTGCACGTCATCTTACTAACAAAGCAGAGCAATGGGGACCCTGTTGACTGGGGTGTGTGAACAGCACACTGTGAGGAGGTTAATTTCCGTGCACCAAAACTGAAGAAGAGTGGCCATGTCTGGCAGTTATGCAAATACACATTCTCTTCTTGAAACTGTATTTCCAGGttatcataaatatattttgttttcagttgcaTCTCATTATATTGTTGTCTAATgactctgaaaataaaataaggcagTCATAATTGGATTTCCcgtgttttctgtttgaatttgcaattaaaaagttgtctttgtgtttgtttttttaaacggTGTGTAATTGGAGTGAACCACAGAATTGTTC

Function

symbol description
jagn1 Involved in granulocyte colony-stimulating factor signaling pathway; neutrophil differentiation; and vesicle-mediated transport. Located in endoplasmic reticulum. Implicated in severe congenital neutropenia 6.

NR:

description
PREDICTED: protein jagunal homolog 1

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014399 True 1465 mRNA 0.44 3 13009705 13015654

Neighbor

gene id symbol gene type direction distance location
AMCG00014403 NA coding upstream 30596 12978471 ~ 12979109 (+)
AMCG00014404 NA coding upstream 31277 12978165 ~ 12978428 (+)
AMCG00014402 NA coding upstream 31610 12970258 ~ 12978095 (+)
AMCG00014392 NA coding upstream 160334 12842790 ~ 12849371 (+)
AMCG00014393 NA coding upstream 168577 12834950 ~ 12841128 (+)
AMCG00014400 NA coding downstream 14232 13029886 ~ 13040944 (+)
AMCG00014401 tfg,LOC102777061 coding downstream 42211 13057865 ~ 13065977 (+)
AMCG00014406 NA coding downstream 223419 13239073 ~ 13240110 (+)
AMCG00014405 NA coding downstream 225186 13240840 ~ 13245634 (+)
AMCG00014414 NA coding downstream 250363 13266017 ~ 13274303 (+)
G69833 NA non-coding upstream 27271 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 409392 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1225622 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1286938 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1368253 11641083 ~ 11641452 (+)
G69959 NA non-coding downstream 318560 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 336679 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 679161 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 1151792 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1451050 14466704 ~ 14467744 (+)
AMCG00014345 NA other upstream 2857792 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3001057 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5527145 7464503 ~ 7482560 (+)
G68848 NA other upstream 5593111 7413640 ~ 7416594 (+)
G68830 NA other upstream 5660238 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 230655 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 639584 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 1173910 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1286793 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 2206260 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021243 jagn1b coding NC_007133.7 CM002906.2 28639026 ~ 28645676 (-)