AMCG00014408


Basic Information

Item Value
gene id AMCG00014408
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13208745 ~ 13237528 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014408
GTCTTACTGACTCAGAAATTGGAAGCACTAACgtcatttaatttgcttatttgtttgttattctctttttacatctatgttgaaaatacattttaagctgtttttattgtatcaagtagtttaatttttatttattttttcatagaGAATTGCTAACTGAATTTGGGCCCTGACCAACTATTTGGATAGCTGTTTGAACACCCCCTGATGAGTTGTTCCAATTCTGACTCATGAGACATAAGTGCAGTTCAGATGGATCAAAGAAATGCCCTTACTATTTCAACCATGCAGGAAAAATTGGAGAGCTCCAAGGTGACAGGTCCATTCAAAATCCCCAAGAGAAAATCCTCCTCTGACTGTATGCTGATGCAGTCTCCTCTGTCTCGCCTCTCTACCAGTCCCAAAAAGATACACTGGACTCAGCTTTCTAATACTGCCAAAAGAGCACAAGCTTTCCCGCCTGTAAACCGAAACAGATCTCAAAACAGCAGCCAGACGTcaggaggcagagagacaggaagCTTCAAGGATGCCAGACTTGTATTGACGGACGTCTTGACGACTGATTTAGGACGTGGTTATTTAAACAGAGGGGCTCACATTAAGCAGTCCGGCTCAGCGATGAACCCCTCAGCCTCACGTGATGTCTCAGAGCTGAGCCCCTTGCCTCTCGCCCCTCCTTGGCAGTCCTGTTTTTCTAAAAGTGTGCGGCCACGACGAGCATCCGACTCTTTGGTGCAGCAGCAGAATGAGAACGTGGCGCGGAGTCGTCTTTCCCTTACCCTGTCCCTGAGGAGATCCGATACAGAATCAAAAGCATCCCCACCAGTCAGCAGGAGAAGGATTATGAAACCTGGGGagagtaataataaacaaagaatGGAAAGTGAGACCAAGAGGTCTCCTGGGCCACAGCAGGTGAAACGGTCTCCGTCTCGGGGCCCTAAGAGGAGTAGGTCAGATAGCAGCCCAGATACTGACAGGCCAGACAGGACACCAGAGGAACCTCAGAAGGACAGGCGAAGAAGTGGTACATCTACATCTCAAAGCAATGGACAGGTACAGAACATAGCTGAGAGCTGCCGGACCTCACGCAGGGAGTTTGTTTCAAGACCACAGGGTCAGGACTCTGGTATTGCTAGAAAACGGCTTGCTTTGGGAGAGCCGGAGCAAATCCCGTCTCCCAGAGGGACACCGGAGCAGAACACTGAGATCTTGCGGGAGAGAGACCTCCACTCTCAGGAGACGTCCCCTTGCGGTGACCACTGTGAGCAGAGCAATGGTGAGAAGAGCAGCCTGGGAATATGGCCCTCTGACTTGAAGAACCCACAGTCTTCCAGTGAGCCAATTGTTCTCTCCAGTGATGAAGAGGAGGGGAGCCATTCCCCCTCTCAGTCCACCTCTCTGACCCCAGATGTTAAGCGGCTGTTGATACGCATCATCAGACCTCCGAGagagccagagccagagccagagccagagccagcGGATATCCACAAGCAGTGCGGGGAGACGCAACACCAGGAAATGGAAGAGGACAGTGACAAGGATGCAAAGCCCGCAAGCTCTGACAGCACTGAGGAAACGACGGTGAAGGATTCGGCTTTGGATCTGAAGTTTACAGCATTGCACTTTGGGAAAGTGAAAGGAGAGCCATACGGCTGTGTTCAAtTTAAAGAAGATGGCATTACAATACCATTGAAAGACCCTCTAGGCGAGAGCCTGTCTCTGACCGTGGTGCAGTCTGAGCTGAAGAGATACGGCGTATGGGAGTGCACAGCGTTGACAGACCACAGTGAAGCCAACACGCTCCTCTTGTTGTGGGTCTCTCCAGCTCAAGCACAGCTTATCCAGAAGGAGTTATCTCCAGTTTATCCAGTAGAAGAGTCAAcCAAGGCCAGTGAGTTTGTGCTGCTGGAGCTGTGCGAGGCGGCCGACGGACAGCTGTGCGAGCTCCTGGCCAGACTGATGGGTGAGATGGCACAGAGGAATGGAGAGGCCGGGCTGCAGGAGCCTCTGTCCCGGGCCGAGGGTTTCTCCTTGCTCAGAAAGCACACATGGTAtccctgcctcctctctctgctTGGGCTGGATCAGGGCCAGAGCCCGGAGCCAGATGACAGCCAGTCCCCCCAGGAAGAGCAGGACCagccctctctcccttctccacAGGAGAACTCTAGTCTACCCATACCCCGCTACACCCTGTGTCATCGCAGAGTGAACAACTCCTTCTCCATCTCCATAGCCTTGAAGCCAAACAAGCCCTTGATCCCTCACCAGTACAGAGGTCCACCAACAAAGTTAATTCTGTTCCCTCCACCACCTACAAAAGGAGGAATTTCCGTCACCTCTGAGGATCTGGAGTGTCTAGAGAACGGGGAGTTTCTAAATGACGTCATTATTGACTTTTACCTCAAGTATTTACTGCTTGAGACGGCCCCCAAGAAGGTGGCTGAGCGTACGCACGTCTTTAGCAGCTTCTTCTACAAACAGCTGACCCGGAAAGATAATCCCAATGAGGAGGCCGCCAACATTTCGGCCCAGCATAGGAGACACCACAGAGTGAAGACCTGGACTCGGCACATAGACATCTTTACCAAGGATTACCTATTTGTGCCTGTCAATCAGGAGTCTCACTGGTACCTGGCTGTCATCTGCTTCCCCTGGCTGGAGGAGCCTCAGTCTGAGGAGTGGACCACACAGGCTGTCCCCAAGAGTGGGCCGCACAAGACCTGCCAGGGCAAGCCGGGGGGCCACACTACTGGAGACAAGGGGGGGCTGAACGGCTTCATGAAGACTGCCACTGCCAACCGCTGCGGCAACAGCCCAGACATCACAGGACTGCACACAGATGACCTGccaaagagagagagtttACCTTGCATTCTCATCATGGATTCTCTGAAGCTGTCTTCTCACGAACGCACAGTCAAACTCTTACGAGACTATCTGCAGGTGGAGTGGGAGGTGAGGAGGGGAACACCCAGGAAGTTCACGTCAGAACAGATGAGTGGTTCCCACTGTAGGGTCCCCTTACAGGACAACAGCAGTGACTGTGGCATCTACCTTCTCCAGTATGTGGAGAGCTTCCTTCAGGATCCTGTAGTCCATTTCGATTTGCCTCTCCGGCTGGAACGGTGGTTTCCTCGGCAGGAGGTGAAGAGGAAGCGGGACAAGATCAGAGACCTGGTATTGCAGCTGTACAGCCAGCAGAGAAGCTGCACCTAATGAAGCCCTGCAGCCAGGCGCACCCTGGCACAGACATTGCACACAGTTCCCCAGAGGATGATTCATAGATGCCAAACTGCCCACCAGTTGCAGAATGTGACAACGCTGTGGCCTCGCTTGCAAATAAAGCTGAAAGACTTTCCAGATACAAACAGATATAAtttatgttcattttcttttctttttttttttaacgtattGTTTTAAGTGGATGTAATTATTCAAAAATGactgtatgaatacatttttagatataATACACAGTGTTTTCTTGCTATTTGAGTCTTGAAATTCTAATTTGTTGGCATCTTGTTCAGCTTTGAGTCGAAGCATATTGAAACGAATGGACATGGTATTGCAGGATTTTTTGCAGGCTTTTTGCCAGTTTTGTTTTGGGCAGATTTTTTTTGGTCGGagaatattacatttgcagaaGAGCGTATCAATCCAGTACATCtgtcaaaaaataattttaaagatatGCACTATGTTCTTTTGAAATGGTCTCCAAATAGTTTCAGCATATTCTCATTAGAAATATCTTGGGTGCTTTAAATCAGATTTAATAGGTGATGTTTGGCTTCACGAGAAGTATGCAAAGTTACTGGTTGTTCTTTCATAAAAGcagtaaagaaaaaagtatttattcagACATGTTTGCCTTATTGTCCTCATGACACTGCCTGTTATTCCCACTTCTCAAAAGAAAGCATCAAACGGAGACGGCCTCACCAACAAGAAACTCAACTTCCGCCTCCTTCACAGCCTCAGACCTCCGTTACAAAAATTTCTAGATATGGACATAGAAAACCGAGAGAGATTTGCATACAGTatacaaaaaaagcacacattttaaaatgtacagcatgTAGAAGAAAAGAAGATTGGTATGTGTGCTCTACTCACATCCTGTTTACTAATTGAAGTAGCTAATCGGTAGAATGCTACCAAGGTATTGAACCCAGGGAGACCCCTGCCGATTATCCTGCTCCAGACTTCCTGTAGGTCCCTAGACAAGGTCAGCCGGTGGGCGGACTGTTGGGTTGTCTATTGGTCACTTAATTGCATCACTTTCCACAGAATTTGATTGTGTTGTTTGGAACTTGTTTGGTTGCCTGTTCTTTACGCTGATCGTGCTAGTGGCTTTCAGAGATGAAGATACAGACTTTGCAGTGGTTCCCTAGATGTATTGATATAGAGCCACTGAACCAACAATTTCTcctaatgtaataaaatgcagtGGGATCTGTAATCTTCAAAATACCCTATTAAGTAGATAGATGGTGGGTAATATCATCCTATCCTTTTGTTAGGCTTACAGAGGATAAGACCCTGTCTGCACATATCTGAAGTATCTTTAGTGTGTAAGCATTTGGGTGAACAGCTGTGACTGTCAATAAAGATGGGAGTCTGAGGGTTGGAACATATGGGGCACAGTGAGATTGCTAAGGATTGGAGAGAGATTTAAGATTTCCTTCCCCCTCCATCAATATAAAGGACCTCCATCAAAGTATTTGCATGTGAGACTAAATATAAAGTAATTACCAGGACCCCCCCGAGTTCTTAATGAGATTAAAGCCCAGGAGCTGTATAAGAATGCACAAGTCACCTCAAACCGACCGTGCACAACTGATCATTTTGAAAGATTGCTTCTGCCAAAAGGTTTCCAATGTGATGCTGAAAtctgtttcttttgtatttttccatgcaCATAAATGCttaggatttaaaaatatgagtcatgttttttaaatcctaaCCATTTTTGGGTTAGGTAGAGAAACATTTGCATACTACATTCttctaaattatgtttttattctatttctGAGCAGAGCTATACAAATGCTAAAAAGGacataaactaaaacaagataATGTCTAACAATACTGGGCCCCAGAGACTGCATAACTgagcaaacaaattaatttgtaaatctggtttaattaatttgttccatttgtgtttgttttactaatTCATGCACACAATGTATACAATGGGTCATTAAAtaccattcaaataaataaactcgaACTTCACACTTGGCATGTattcacagaaataaattatgcaGTTTTTTTAGATATATTCACAGAAG

Function

GO: NA

KEGG:

id description
K08596 SENP7; sentrin-specific protease 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014408 True 5333 mRNA 0.46 22 13208745 13237528

Neighbor

gene id symbol gene type direction distance location
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding downstream 4938 13175211 ~ 13203807 (-)
AMCG00014398 NA coding downstream 226250 12907404 ~ 12982495 (-)
AMCG00014397 NA coding downstream 333209 12850007 ~ 12875536 (-)
AMCG00014396 filip1l,LOC100693076,LOC102213048,LOC102798342,LOC101473988,LOC105027992 coding downstream 427907 12778483 ~ 12780838 (-)
AMCG00014395 NA coding downstream 469080 12729727 ~ 12739665 (-)
AMCG00014413 txnl4b coding upstream 4298 13241826 ~ 13242652 (-)
AMCG00014410 NA coding upstream 14407 13251935 ~ 13260989 (-)
AMCG00014409 rpl24 coding upstream 24851 13262379 ~ 13265549 (-)
AMCG00014437 me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468 coding upstream 140134 13377662 ~ 13408576 (-)
AMCG00014434 LOC106575972 coding upstream 205742 13443270 ~ 13473171 (-)
G69896 NA non-coding downstream 122400 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 238190 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1328289 11879097 ~ 11880456 (-)
G69743 NA non-coding downstream 1437352 11769690 ~ 11771393 (-)
G69539 NA non-coding downstream 2387673 10815771 ~ 10821072 (-)
G69950 NA non-coding upstream 64396 13301924 ~ 13302379 (-)
G69973 NA non-coding upstream 66898 13304426 ~ 13375879 (-)
G70034 NA non-coding upstream 385587 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 457229 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 521698 13759226 ~ 13761420 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 74994 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 1541208 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2071659 11125029 ~ 11137086 (-)
G69537 NA other downstream 2410598 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3147515 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3484545 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4209340 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4351739 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4753123 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5964275 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location