AMCG00014973 (ddx17,LOC101071115)


Basic Information

Item Value
gene id AMCG00014973
gene name ddx17,LOC101071115
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41452443 ~ 41460863 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014973
CTACGACGCCGCCATTTTCTCCTAAAGATCGTTGTGGATGAAGGCAGTTAGAGATACGCACAAACTTTCTGGAAAAATAATATCTTTATCGTTTTCGTAAGATTTATTAAGTaaccaacttttttttccctgagattatatttatatatatatagttttgtttctgGTAGCTGGCGCTGAGTGAACATTGACAAATAAGTCGGGCTTGTTTGTGGGCGGAGTGAACAGCCGTGTTGTTCTGTATTGTGCTTGCGTCTCCACCGCGAAACAAGCGGCTGCAGCCCGAGTTCACAGCCGGTTCATTACAGCTCCCGTGTAATTCGTGCGGAGATGCGAGGCGGCTCGTCGTACGGAGACCGGGACCGGGACCGGGACCGCGGCAGAGACCGGGGcCCTCGTTTCGGCTCCAGTCGTGGCGGCCCTCCTCCCACCAAGAAATTCGGCAACCCGGGAGAGCGCCTGCGCAAGAAGAAATGGGATCTGGACGAACTTCCCAAATTCGAGAAGAACTTCTACACGGAGCACCAGGAGGTGGCCCGGATGAGCCAGtatGATCTGGAGGAGTTTCGCCGGAAGAAGGAGATCACCATCCGTGGCACCGGCTGCCCCAAGCCCGTCACCAGCTTCCACCAGGCGCAGTTCCCCCAGTATGTGATGGATGTGCTGATGCAGCAGAACTTCGTGGAGCCCACAGCCATCCAGGCGCAGGGCTTCCCCCTGGCGCTGAGCGGCCGCGACATGGTGGGCATCGCGCAGACTGGCTCTGGGAAGACGCTGTCGTACCTCCTGCCAGCGATTGTGCACATCAACCACCAGCCCTACCTGGAGAGGGGAGACGGGCCCATCTGCCTGGTTTTGGCACCGACCCGGGAGCTGGCCCAGCAAGTGCAGCAGGTGGCGTTTGACTACGGCAAGTCGTCCCGCATCAAGAGCACCTGTATCTACGGGGGGGCACCCAAGGGCCCCCAGATCAGAGACCTGGAGAGAGGCGTGGAGATCTGCATCGCCACCCCGGGCCGTCTGATTGACTTCCTGGAGTCGGGGAAAACCAATTTGCGGCGCTGCACCTACCTGGTGCTGGACGAAGCCGACCGCATGCTGGACATGGGCTTCGAACCACAGATCCGCAAGATCGTCGACCAGATCAGGccgGACCGCCAGACTCTGATGTGGAGCGCCACCTGGCCCAAGGAGGTGCGTCAGCTGGCGGAGGACTTCCTGCGGGACTACGTGCAGATCAATGTGGGCGCCCTGGAGCTCAGCGCCAACCACAACATCCTGCAGATCGTGGACGTGTGCATGGAGAGCGAGAAGGACAACAAGCTGATACAGCTGATGGAGGAGATCATGGCAGAGAAGGAGAACAAGACCATTATCTTTGTGGAGACAAAGAAGCGCTGCGATGACCTGACCAGGAGGATGAGGAGAGACGGGTGGCCGGCGATGTGTATCCACGGAGACAAGAGCCAGCCGGAGCGAGACTGGGTGCTGACAGagTTTCGCAGTGGCAAGGCCCCAATCCTGATTGCGACGGACGTGGCTTCTCGGGGGTTAGTCTCCCTCCCCCCGGCGCTCGGAAGCCGGCATTCACAGGCTTTCGAAGGGGGAAGGGACGGGGGGGATGGGGCGTGCCTGCCGCAGGACCTAGGCATGACTAATCAAGCGCCCAGCCCAGagcggagagggagagaaggccCAGATTTATCGATCCTCAGCCCAGTCCTCCTGTCtcgaggaaaaaaaaaaaaaaaaccaaaccctccaccaccaccacccccacccagGGAACTCGACCTGGGCAGGGGGTAACGGCAGAGAGTAAAGGGGGCTGCTGGGCTGCCAAATTCCAGCTGGGGAGGAAAGGTGGCTGAGCTGGGGAAAAGGGTTTAGGGGGGGCCTGCCTTTtgcggttgttgttttttttcttcctgcctCTTAAAATCTCTAAATGCAGCCGTCCACCCAAGCTGTTGAAGATGCCTGTGTTGCTGGGCAGGGGGGCACCAGGCTGAGGCAGGCAAACCTCTGGGCCCAGCTGTACTGGAGCTGTGAGTCTTCTGGGTCTTTGTGAAGTCTCAAAGGAAGATTTAGTCAACAACATAGctgaactgcactgtgtgtACAGCTTACCAGACCTGGGCAGTGTCAAGGGTTTCTGTCCGTAGACAGGTGTGTAGTGTTACTGGACTTCAGCGCAGTATGTCCTAGGTGTGTCAGTGTAGACGGGTGTGTTGTGATACTGGAGTTaagtacagtgtgttacagatGTCAGTGTAGATGGGTGTGTAGAGTCACTGGAGGGGCCCCCCCATATCACCCTGGGTCCTCAGCCCCCCCGGCtccctcctctgcctcctcctccttttcttctcctcctcctgctcctcccgTGGGCCCAGCCCCTGCGTGCGGGCGTCATGTCTGGTGTCCTGTTTGGCAGTGTCCCGCTCCGGCCAGCGGCTGCTGTGcaaagggaggggggagggggcagccTGGAGCCGCCGTGCCGCGTTCAGCCGCCCAAATGCTTCTGCGCCAACAGACcccagaacagaacagaacgaCAGGTTTCACTGCAGCCCCCACTGCCAAAAGTCATATTCATCTCTGTGCAGCGTGCGTAGATGCTCCAGAAACACAGATACAATATTACCCAGCAGCCCTTACTtccaaaagagagaaaaacatcttGCCTAGCCGCCCCCCCGGTAAATGGAACCAGACAAAAAAAGAACGGTCACTTTACCCATAGTGCACCACTGTGACAGATCACTTGTCtgttttatcatcatcatcaaactCCTCGAGGCAAAAAGCAGTTTCCTCCTGATTTGTCCCTAGCCCCCTTTTCAAGTCTCCACTCAAACAAGCCCCACCACCCGTCTTGTCCCCCCATCCTCGAGCCTGGACACCCATGGTCTGTTTCTTGTTACTGCAGTAGTCGGGAGTTTTCTGGGCTGTGCTGCCTGCTGCGCTCAGGGCGAGGGGCTGCGCTGTCAGCCGCTCCCCCGCTGTCTCCTctgtctcctgtgtgtctgtgttcgAAGACAACGACAAATTGAGAAATCTGTAACACTTGGGTGGAAGCTGCCACCACTACACTGCCAGGCCAGACTCATTGTTTCCTAAATATCCCATCTATAGTTAGAAGaaagaaactatttttttatttttgggagcCTGAGAAAGGTAAGATGTGTTCTCCCCTCCGAGCAagaaatatcattaaaaaatacatatttttgttttcttgtcctgGAAGAAGGAGGTTTTTCTCTAATGGGTCAGacctttttcaaaaataaactatttggaAAGCCACTAGCAGAATCTCGGCCCCCAACACACCCACCCACTCGCTCGACCTCCTCCCTGTTCGGGCAGAAAGGCAAATCTGAGCAAAGatgtaaaaagtacattttaaaaatctatatacaATGCAGGTTCCCTAAACTTAACCGTGGACTTGCCCTAAATTCTTCACTCCCTGGCCTCCAGCAGAGGGAGGCCTGTGTCCCCTCGGGTGTTCAGTGGGGCCTGTAGGTCAGGCAGCCGTGACGCCCTGAGGTAGCGCCAGAAGAGTGCAGATTTATAATTCACcagaccccctccccccaagcCACCCACTTGCCCCATAAGCCccctctggagtctggagaCTGCCCCTTGCTCTTGCTCCTGACCCCCTTGCCCACCCTCCCTCCATCCTTCACTGGCCGGCGCCTGGGCAGAGGTGCTGTCCTGGTCTCTTCCTCCGGGGGGAGACGAGGAGGAGGCCTAAAGACCTGGGACTCGCCTCGTCATGCTGCCCAGGGCACGGAGGGAGACGCTGGGAAGGGAGTGCAGACCCAGTGTGCTGGAGCCTGGTGAGAGGGCTGGGGCTCAGACCCAGAGGGACAGGGTAAGGAGGTGCGGGCCCGGGCTTCTGAGGTCCGGGTCAGACTGGGGCTCGGCGGCAGAACCAAGCAGAACGGCGGCAGCAGTAGGaggcggcagcagcagcggcgcCTCAGGTTCTGGCCTGCCAGGGAGTTGGGCGGTTCTGACCCGTTAACCTCCAGGACAGGTGTGCGTGAGGGGAGGTAGCGGAGCTCTTACCTTGATCTAGCGCCGGCTCCTGTAGCAGCGGTAAGTACGGCTGACGAACACAAAAGCACGCGCGTCGCACAATTACCCTCCACTCACTGCAGTTTAGACACCCCTTGGCGTCTCTGCCCTTCAGCTGTGCAGCCATAGAGGCCAGTGTCATATGAGCCCCTGAGTTGGTGTTCCTTCCTGTGTTGCTTGTTTGTTCATCCTGCTAACCCTCCTGACTAACTCTCTTTATCtttgtcttctgtgtgttttatttacttatttaagtGTCTGTTTTCGCTGGATAATTCCAAATCTACAGTATGACagatctccccccccccccccccccttctcccccTACAAAAAGAAACTGATTTAAAAGGAGACGTTTCCTCTCTGAAGCAGCAGTGGTGTGTTTGTCCAGAGCCCGTCCTCTGTAATGAGAAACAGACTTGTTTCGGTTCGGTGTTCGAGAATTGCAGCCCGGTGAGCCCGACCAAACAAAAGTATCTGCACGATTTTTCTGAGCAGTTGATGCAAACCTACCCACCTCCTTTCTCAACCACTGCCACCTCGCCCAATACATTTATATCCGTGCCAAATCACCCCCCCAAGACCCTCTTGGCGTGTCCTTGAGCCCCTGCAGATTTTGACACAGGACCGGTGAGATGTTTGGAGCCCAAACGCCCTGTCCCAGGCTGCCCAGACTGGGGGCAGATGTTCaaggattctctctctctctctctcagcctctgtctctctctctttctctctgagaGTCCACTGTATGTTatcctgttttattttcagtcctAGGACATCTCTCCCAGTCTTGCTTGGGCCCCTGTGCAGGAAGCTCTAAAACCTCTTGCCACTGCAGTACCAGTGTTTTAAATTTGACCGCCAGTCCCTCTTGAACGCCAGCTCGTCCCTCTGATCTGCAGGCACAGCCGTGTCTCCCGCACTATGAAGCAGTGCCATGCAAACGCACCCCCACTCGCCCCTGGCCATAGGTTATAGTGAGGGGGGGGCAGGGCGCAGAGAAGCATGAGGCCGCTGTGTCAGAGACGCGAGCGCTGAACTCCAGACTGGATgagtgtgcgtgtctgtctgtgtgtctgtcggGTGGGCAGTGGgcgcttttattttatttatttttatttgggggggggggtttgtgtTTCAGCAGGTCAGTGTGCAATAGCGggttgtaaatgtttaaaagatgACCTGTGCCATTGAGCACCAGTAGTGAAGTGGCAAATACATAGTTATGACTCAAAgtcctgtgtgtgagtgtgtgagaatcagtttgtgtgtgagtgagatgGTGTAAGTGGAAACCGTTTTGTGGTTGGGTTGGCACTCTGCAGTCCTTCAGGCCGCTGGCAGGTAAGTCCCGAGTCTGACGTGACTGGAGAGTTTCAGGTGAATCgcgaggggggtgggggctgtggTGAGGCTTCACTCTGCAGTGGTTGTTGGGGATGAATCAGAGACTGAGTTGAGCAGTCTGAGACCTGGCCAGAGTGCTGGGTTTGgagatgtttgtgtgtctgaagtGTCTGGCACAGTCAAGGTAAGTGAAGCCAGGAGAGTTAGCTTTGCAAAGGTGTCGTTGATTTATTGGATTTAGTCATTTGCCTGGGAGGGCTGGGGACGAGACACTCGCGTTGTCTCACACTCTGTAGTGCAGTGGATTAATCcaaataaacatcaatacatgatCAGCAAAATCAGCTGCCCTTTGCAAAGTCCTTGTCACCAGATTCATCCTCCTCCCACTCGATCTGCCCTCACCTTCACCCCCATCTTCCTGTTGTCATCTCCAGGCTCTAATTTGTCTTTTTCCCC

Function

symbol description
ddx17 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human DDX17 (DEAD-box helicase 17).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014973 True 5931 mRNA 0.55 12 41452443 41460863

Neighbor

gene id symbol gene type direction distance location
AMCG00014974 LOC108424764 coding downstream 16815 41421861 ~ 41435628 (-)
AMCG00014972 polr2f,LOC107727050,LOC107711805 coding downstream 36432 41413412 ~ 41416011 (-)
AMCG00014967 NA coding downstream 225636 41177884 ~ 41226807 (-)
AMCG00014962 NA coding downstream 461652 40989672 ~ 40990791 (-)
AMCG00014959 LOC107676178 coding downstream 529577 40912194 ~ 40922866 (-)
AMCG00014975 dmc1 coding upstream 2731 41463594 ~ 41469552 (-)
AMCG00014977 NA coding upstream 28026 41488889 ~ 41515465 (-)
AMCG00014984 NA coding upstream 213921 41674784 ~ 41687445 (-)
AMCG00014985 NA coding upstream 227690 41688553 ~ 41689983 (-)
AMCG00014983 csnk1e,LOC103143618,LOC101067908,LOC103468446,LOC107096663,LOC106915477 coding upstream 230014 41690877 ~ 41698688 (-)
G75064 NA non-coding downstream 1110 41450090 ~ 41451333 (-)
G75035 NA non-coding downstream 42831 41406917 ~ 41409612 (-)
G75032 sox10,LOC106607141,LOC106601158,LOC107104518 non-coding downstream 46644 41405462 ~ 41405799 (-)
G74978 NA non-coding downstream 182260 41269927 ~ 41270183 (-)
G74970 NA non-coding downstream 188536 41262768 ~ 41263907 (-)
G75145 NA non-coding upstream 190473 41651336 ~ 41673042 (-)
G75144 NA non-coding upstream 209293 41670156 ~ 41672310 (-)
G75170 NA non-coding upstream 351470 41812333 ~ 41815261 (-)
G75241 NA non-coding upstream 516892 41977755 ~ 41991977 (-)
G75247 NA non-coding upstream 532700 41993563 ~ 42022081 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 120673 41329313 ~ 41331770 (-)
G74945 NA other downstream 282892 41169041 ~ 41169551 (-)
G74890 NA other downstream 518489 40931797 ~ 40933954 (-)
G74887 NA other downstream 527006 40922964 ~ 40925437 (-)
AMCG00014958 NA other downstream 542992 40906225 ~ 40909451 (-)
AMCG00014971 NA other upstream 9431 41470294 ~ 41474481 (-)
AMCG00014978 NA other upstream 77423 41538286 ~ 41561967 (-)
AMCG00014981 NA other upstream 294743 41755606 ~ 41766826 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 599427 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 658424 42119287 ~ 42131232 (-)

Expression


Co-expression Network