AMCG00021090


Basic Information

Item Value
gene id AMCG00021090
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2677585 ~ 2718919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021090
ATGAGGAACCCCCCAGAGGGCTGGCGAACCATCCCAGAGAGCAGGCCGGCAATCCCAGAGGGAGGTCCGGACCGCAGCGAGCCCAGGGTAGTTGAGCCCGACCCCAGCGCCGATGCTTGCCCCCTGGGCCACTTCCCCTGCGGGAACCTGTCGGTGTTTGATAACAGCGGATGGCCTCACCTGTTCGATGCCTTCTTAAAGACGAGCGTCGAAGAGACAAAAGAATGCTTGTTGGACGTTTATCCCGAGGAGTGCCTGTGCGAAGGCAGGAAGGTGGACTGTACCAACAAAGGCTTTCACAGCGTCCCTGCGGTCTCCTCCAACATCACCACGCTAGAGCTGAACAGCAATCAGATCACATCTCTGTCAGCGGACCTGTTCATCAGATACAAGAACCTGGAGAAACTacATTTGCAGAATAACAGCATGAGCACCATCTCAAACAGAGCATTTTCAGGACTTCACAAACTCAGGAAACTGTTCCTCAGCCAGAACCGGATCACGGTGCTGAAGAAGGGGGTTTTCAGAGACCTTGGGAATCTCGAGTGGCTAATCCTGGAGGACAACAAAATATCTGTGATCAAGTGGAGGTCATTTTTGGGACTGAAATCGCTCTTTTTCCTgtCTCTACTGAACAACTCACTCGAACACATCCCCAAGAAATCGTTTTGCCAGGAAATGCCGAGGTTGAACTGGCTGGAGCTGGAAGGCAACAAGATCTCGTCATTGAGGAGCTCCGGTTTCCGAGACTGCGCCTCTCTGACGGTGCTGGCGCTCCGGAGAAACCAGATACAGATGATTGAAGAAGGCGCTTTCTCAGCCCTGCACCGGCTAATAGACCTAGACTTATCTGTCAATCGAATTCAGGAGCTGCCATCATCCGTCTTCACAAACCTGCAAAACCTGAAGCAGCTgaaCATCTCACACAACCCTTTCAGCCACATCTACGAGGATCAGTTTGACAGCCTAGTCAATTTGCAGTCGCTAGGCATCGAAGGCATCGAAATCCCCAACATCTGTAACCGGATGTTTCACCCCCTTGGCAATCTCTCTCACATATATTTTAAGAAGTTCGAGTACTGCGGCTACTCCCCCAACGTCCGCAGCTGCAAGCCCAACACAGATGGCATCTCGTCATTCGAGAACCTGTTGGCCAACATCATCCTGCGCGTGTTCGTGTGGGTGGTGGCGTGCATTATCTGCTTCGGGAACGTGTTCGTGATCTGCCTGCGCTCCTGCATCGCCTCAGAGAACAGGCACCACACCATGTCCATCAAGTCACTGTGCTGTGCCGACTGCTTGATGGGAGTCTACCTCCTCTTCATCGGGGCCTTCGACATCCGCTACTGCGGCGAGTACAATCGGCACGCTCAGCTGTGGATGGAGAGTCTGCAGTGCCAGCTGATCGGCAGCCTGGCCATGCTCTCCACAGAAGTGTCCGTGATGCTGCTGACGTACATGACCCTGGAGAAATACGTGTGCATCGTGTTCCCTTTCCACAACTACCGGGCGGGCAGGAAGCAGACTCTGTCCACCCTCATCTCCATCTGGATTCTGGGCTTCATCATCGCCGTCATCCCCTTCTGGGACAAGCACACCTTCGGGAATTACTACGGGAGGAATGGTGTGTGTTTCCCGCTGCATTCGGACCTGACGGAGAAGCCGGGGGCGAGGAGCTACTCGACGGGGATATTTCTGGGGCTGAATCTGTTTGCCTTCATCACCATCGTCTTCTCCTACACGAGCATGTTCTTCTCAGTGCGGAAGACAGGAGCCAAGACGGCGAGACAGAGCGTCTTCAACCGAGAGGTGACCATCGCCAAGAGATTCTTCTTCATCGTGTTCACGGACGCCTTGAACGTCTCtaatctcctctctctcctagGGACGATCATCCTGTGGGTGGTGATCTTCATTCTGCCCATCAACAGTGCCCTGAACCCCATCCTGTACACCATCACCACCACGTTCTTCCAGGAGCGCCTGAAGCACTGCCTGCAGATGAAGTGGCAGCAGCTGGGCATGCGGGAGACGCGGCACAGCATCTCCATGATCTCCACGCACACCCGCGTGAGCGCCGAGTAG
>TU104173
GTACAATCGGCACGCTCAGCTGTGGATGGAGAGTCTGCAGTGCCAGCTGATCGGCAGCCTGGCCATGCTCTCCACAGAAGTGTCCGTGATGCTGCTGACGTACATGACCCTGGAGAAATACGTGTGCATCGTGTTCCCTTTCCACAACTACCGGGCGGGCAGGAAGCAGACTCTGTCCACCCTCATCTCCATCTGGATTCTGG

Function

GO: NA

KEGG:

id description
K04307 RXFP2, LGR8; relaxin family peptide receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021090 True 2085 mRNA 0.54 18 2677585 2718919
TU104173 False 203 TUCP 0.57 1 2681560 2681762

Neighbor

gene id symbol gene type direction distance location
AMCG00021086 NA coding downstream 93968 2583330 ~ 2583617 (-)
AMCG00021085 NA coding downstream 100631 2522860 ~ 2576954 (-)
AMCG00021082 NA coding downstream 265251 2402174 ~ 2412334 (-)
AMCG00021077 NA coding downstream 431894 2230508 ~ 2245691 (-)
AMCG00021078 NA coding downstream 501051 2157649 ~ 2176534 (-)
AMCG00021091 LOC106603306 coding upstream 536460 3255379 ~ 3265211 (-)
AMCG00021092 efnb1,LOC106603306,LOC106567780 coding upstream 569075 3287994 ~ 3288740 (-)
AMCG00021105 NA coding upstream 1014837 3733756 ~ 3736353 (-)
AMCG00021110 NA coding upstream 1060902 3779821 ~ 3801007 (-)
AMCG00021111 NA coding upstream 1091492 3810411 ~ 3813043 (-)
G83465 NA non-coding downstream 74745 2600509 ~ 2602840 (-)
G83442 NA non-coding downstream 160459 2515490 ~ 2517126 (-)
G83441 NA non-coding downstream 166036 2511324 ~ 2511549 (-)
G83422 NA non-coding downstream 322891 2353987 ~ 2354694 (-)
G83371 NA non-coding downstream 486676 2190626 ~ 2190909 (-)
G83499 NA non-coding upstream 222664 2941583 ~ 2954613 (-)
G83512 NA non-coding upstream 317378 3036297 ~ 3056152 (-)
G83517 NA non-coding upstream 368775 3087694 ~ 3087955 (-)
G83539 NA non-coding upstream 703283 3422202 ~ 3422446 (-)
G83596 NA non-coding upstream 991234 3710153 ~ 3718190 (-)
G83428 NA other downstream 218206 2457001 ~ 2459379 (-)
G83313 NA other downstream 699617 1973160 ~ 1977968 (-)
G83761 NA other upstream 1984336 4703255 ~ 4751235 (-)
G83864 NA other upstream 3825573 6544492 ~ 6546577 (-)
AMCG00021153 NA other upstream 4396501 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 9374558 12093477 ~ 12100854 (-)
G84814 NA other upstream 9808174 12527093 ~ 12527694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location