AMCG00021375


Basic Information

Item Value
gene id AMCG00021375
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16048516 ~ 16059328 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021375
ATGgcaaccccccacacacagcgCACAGTGTTCCCGTGGGAGGCGATGAACGCGGGCCCAAGCGAAGGGGCCCACTCAGCAGCGAGGCTTGTGTATTCAGCAGACATTATGGCTGGCAAGAAGATGGCATCCTATGGGAAGATGCTGCTGCGACGGCGGGTGCTAGACTGCTCACAGGAAGAGACGCGCTTTGCTCGCTGCCTCTCCACACTGGACCTGATTGCGCTGGGCGTGGGCAGCACATTGGGCGCAGGCGTGTACGTGCTAGCGGGAGAAGTAGCCAGGGAGAAGGCGGGGCCGGCCATCGTGCTCTGTTTTCTGATCGCTGCACTGTCTTCGGTCCTGGCGGGTCTTTGCTACGCGGAGTTCGGTGCCCGTGTGCCCAAAACAGGCTCCGCCTATCTCTACAGCTACGTTACGGTGGGGGAGATCTGGGCATTCATCACAGGCTGGAACCTCATCCTGTCTTATGTCATAGGTACGGCGAGCGTGGCGCGAGCATGGAGCTCCACCTTCGACAACCTGGTAGAGCAGAAGATCTCCATCTTCTTCAAGGCGTCCGTGTCCATCAAAGTGCCGGGCGTGCTGGCTGAGTACCCTGACCTGTTTGCTCTCATCCTGGTAATGCTGCTCACAGGCCTGCTGGCGTTTGGTGTGAGCGAGTCTGCTCTAGTCAACAAGATCTTCACTGGCGTCAACCTTGTGGTGCTGGGCTTCGTTATCATCTCCGGCTTTGTGAAGGGGAACACTGACAACTGGAGGCTGACAGAGGACCAGTACATGAATTACTCCAACCATGTGAATGATTCAGATGCGATAAAGAAGAGTTTTGGAACTGGGGGATTCGCTCCATTTGGGTTTAGCGGTATCCTGTCCGGTGCCGCCACGTGCTTCTACGCCTTTGTGGGATTCGACTGCATCGCTACTACAAGTGAGGAAGCAAAGAACCCACAGCGCTCCATCCCCATCGGCATCGTGGCCTCCCTGCTCATCTGCTTCTTTGCCTACTTTGGGGTGTCAGCCGCGCTCACCCTCATGATGCCCTACTACATGCTGAACGTGCAGAGCCCCCTGCCTGAAGCCTTCAGCTACGTGCAGTGGGACCCCGCTCGTTACATCGTGGCTGTCGGCTCCCTGTGCGCCCTCTCCACCAGtctGCTGGGCTCCATGTTTCCCATGCCGCGGGTCATCTACGCCATGGCTGAAGACGGGCTGCTGTTCCGCTTCCTGTCCAGCATTAACAAAAGGACCAAGACACCCCTGCTGGCCACCATCGTGTCTGGCGTGGTAGCAGccctGATGGCATTCTTGTTTGAGCTGGCCGCCCTGGTGGACCTGATGTCCATAGGAACCCTGCTGGCCTACTCGCTggtggcagtgtgtgtgctcATCCTCAGGTACCAGCCAGGCACCCTGAGCTCTGGGCACAGCGAGAAGATGGTGGAGCTGAGCGGGGAGAAGACGGCCATGGCGGATGTGGACAGTGGGGATGAGTTTGCCACAGAAACCGTGCCCCTTAAGGAGAAGTTTAGCATGAAGCTGCTTCTGCTGCCCAACTGCGAAATGCCCACCAAGACCTCGGGGACCATTGTCTATGCCACCACCGCCGTTATCTcatTAGTGTTCactgtcctgtgctgtgtgctgtctCTGTGGGGCTCCGAGATGATGAAAGGGAACGTCCTGTGGTTGACAGTGTGTGTGGTCCTGGTGCTGATCTCGGCCGTCTGCATTCTCATCATCTGGAGACAGCCGGAGAGCAAGGAGTCGCTGACATTCAAGGTCCCGTTCCTGCCCCTGCTGCCTCTCCTCAGTATCTTTGTCAATGTCTACCTCATGATGCAGCTGGATGGACACACCTGGATCCGGTTTGCAGTGTGGATGGCCATCGGTTTCCTAATTTATTTTGCCTATGGCATCTGGAACAGCAAAGAAGCCCAGAACTCCTCCCGCAAATACGAGCCCGCCCTCCGTGCCAAGACCCCCATCTACTTGGGAGACGACTCTGAGGTTGAGGGGACTGTGGCCtga

Function

GO: NA

KEGG:

id description
K13865 SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021375 True 2031 mRNA 0.57 12 16048516 16059328

Neighbor

gene id symbol gene type direction distance location
AMCG00021372 NA coding upstream 10732 16022358 ~ 16037784 (+)
AMCG00021374 snx12,LOC107673821,LOC107733510,LOC107557076 coding upstream 31596 16011194 ~ 16016920 (+)
AMCG00021370 LOC107752047 coding upstream 60904 15981081 ~ 15987612 (+)
AMCG00021367 NA coding upstream 109216 15935436 ~ 15939300 (+)
AMCG00021368 NA coding upstream 116923 15927660 ~ 15931593 (+)
AMCG00021384 NA coding downstream 43645 16102973 ~ 16103209 (+)
AMCG00021383 NA coding downstream 47170 16106498 ~ 16107682 (+)
AMCG00021381 NA coding downstream 51088 16110416 ~ 16110859 (+)
AMCG00021379 vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614 coding downstream 51980 16111308 ~ 16113420 (+)
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding downstream 66193 16125521 ~ 16131258 (+)
G85552 NA non-coding upstream 125795 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 293084 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 471998 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 485599 15561745 ~ 15562917 (+)
G85440 NA non-coding upstream 518844 15487242 ~ 15529672 (+)
G85623 NA non-coding downstream 81195 16140523 ~ 16169886 (+)
G85674 NA non-coding downstream 230421 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 488329 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 510119 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 512865 16572193 ~ 16572868 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 616152 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 1975391 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2014959 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2611108 13435307 ~ 13437408 (+)
G84749 NA other upstream 3947809 12075345 ~ 12100707 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 4171 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 530853 16590181 ~ 16592973 (+)
G85787 NA other downstream 597316 16656644 ~ 16714038 (+)
G85869 NA other downstream 938549 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1410997 17470325 ~ 17473396 (+)

Expression


Co-expression Network