AMCG00021380


Basic Information

Item Value
gene id AMCG00021380
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16176362 ~ 16181822 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021380
CAGACACCAGCAGTACACTTGACAGTTGCCCTGAACAGGCTGTCAAATCGTCGTCTCCAACAGCAGCTCTGGGAAGGCAGAACAATGCCAGTGAGAGAGTGGGATGCAGCATTACTAGCACTGGTCCTCTTGGGCACACCGCACAGCTCTGCGGGCAAAGGGCACTGATGCCACTCACAGTCAGACGGGACTTATTTCACGTCATTTTATGAATGAAAAACTGCTCACACACAGTGGCCAAGTGCTGTGACTCGTCAGCTGTCTCTTTGCTCAGGTTGGACTgcagccccccgcccccctttTGGAAGACAGACTATCTAGCCCTCAAGATAAAACCCAACAGCTGtgcgggagagagggagggaaccGGTCTATTTTTATCCTTCACTCGACCTGGCATCACAGTGTGCGTCCCTGTCATATACCCCCTACCCCCACGCCTGTCCTCGTCTTCTCTAGCAAGTCTGGGTGGAAAcgtcgagagagagagagagagacggacccCGGAGGCGATTAGTTTTAAACGGGACTGGCCTGCTGGGGATTGcacaggagggagaggagaccGACAGGGAGAAGGCGCAGTAGCTGAGATTTGCCGAGCGGAGCGACGGGGGAAAACGCCGGTACAGACGGGAGAGGCATGGAGCTGCTGTGTTACAACAAGGGCTGCGGGGAGCGCTTCACAGCCCAGAGCAACTCTGACGACGCTTGTCTTCATCACCCGGGTGTCCCAATATTCCACGATGCTCTGAAGGGCTGGTCGTGCTGCAAGAAGAAGACCACTGACTTCTCCGAGTTCCTGTCCATAAAGGGTTGCACCCGCGGCCGCCACAGCAATGAGAAGCCCCAGGAGACTTTGCAGCCCGAGGTGACGTCTGACAAAGCGAACGGCTCCCGACTCCAAGCTGAGGATAAGGTCATCCTCCGGGAGCCCAAGTCTGCCGAggccctgcagagagagaggcccAGTTCGGACGAGCCCAAGACCAAACTGCCGGTCAGGGTGTCGCAGTCTCTCGCGCAGGCCCTGGAGAAGCTCAGTCTCTCGGAGATGCAGAAGAAAAAGGAGCAAGAGAGCCAAGCTGTGATGCCCGGCACGAGGTGCAAGAACGCTGGCTGCAAGACGGTCTACAGTGGCCCGGAGACGGATGGCGAGACCTGCCTGCACCATCCCGGGGTGCCCGTTTTCCATGAGGGCTTTAAATACTGGAACTGCTGCTGCATCAGAACCACAGACTTCAATGCTTTCCTGGATCAGAAGGGCTGCAGTACAGGGAAGCACACCTGGGTCCCCAAACAGATGACAGTTCACATCCAGTTCGAGAGCGATAAACTCTTTCACAAGGATTTTCACCTCTGGGGGGTGGCCAGTGTGGAACAGAGCTTTGTGAACATGGTGCCCAGCAAGGTGGAGGTGACCCTTGTTAAGGCCGACCCTGTGTCCTGGGCCAAGCTGGAAGACCCTCGCGCCCACGTGGAGCTGGCCGAAGGACTGCAGGAGAGCGAGGAGAGCGAAGATGTGCGGCCTGACTGGGACATCTCCGACGATGACATCAGCGAGTCCGATGAGGAGTTTCAGTAGCGGCGCCGCCTGCCTCTTCATTTCTGCTGtggctttttctctttcttttatcttagtttttattcagatttttcctcttttctttcttttctacaAACACACTTTACTCCTTTCTGTTGCACGGGCATattctgagaaaaacaaaggaagaaatgttaatgtgatatattgtaacaattgtaagtcaccctggataagggcatctgctaagaaatgtaatgtaatataatacaataaaaagaaacaagttGCCCTGAAACACCTGTGCATCTTCTAAGTATATC

Function

GO: NA

KEGG:

id description
K16729 CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021380 True 1869 mRNA 0.54 10 16176362 16181822

Neighbor

gene id symbol gene type direction distance location
AMCG00021378 LOC108434851,LOC107742289 coding upstream 10202 16138851 ~ 16166160 (+)
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding upstream 45104 16125521 ~ 16131258 (+)
AMCG00021379 vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614 coding upstream 62942 16111308 ~ 16113420 (+)
AMCG00021381 NA coding upstream 65503 16110416 ~ 16110859 (+)
AMCG00021383 NA coding upstream 68680 16106498 ~ 16107682 (+)
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding downstream 2001 16183823 ~ 16184805 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding downstream 18123 16199945 ~ 16202371 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding downstream 41082 16222904 ~ 16232810 (+)
AMCG00021386 NA coding downstream 74643 16256465 ~ 16270872 (+)
AMCG00021389 NA coding downstream 106932 16288754 ~ 16289608 (+)
G85623 NA non-coding upstream 6476 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 253641 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 420930 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 599844 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 613445 15561745 ~ 15562917 (+)
G85674 NA non-coding downstream 107927 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 365835 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 387625 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 390371 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 402495 16584317 ~ 16584765 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 102741 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 743998 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2103237 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2142805 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2738954 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 408359 16590181 ~ 16592973 (+)
G85787 NA other downstream 474822 16656644 ~ 16714038 (+)
G85869 NA other downstream 816055 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1288503 17470325 ~ 17473396 (+)
G86121 NA other downstream 2066668 18248490 ~ 18249686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G137232 NA non-coding NC_047602.1 CM018548.1 22592233 ~ 22593268 (+)