AMCG00021491


Basic Information

Item Value
gene id AMCG00021491
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19384029 ~ 19391754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021491
GATGTCTAGGCACAGGTTTCGTCCGTCCATGTGGATTGAAGTGTGTTATTATTAACCTGGTGTAGGTCATCAGTACGGGCAGTACTCGACACGACATGGGGAGCTTTCTTTGCTCGTGTAACTGATCTGCTCAGGCTGATGATTTGTTATTGCCATGCGGGTGACAGCGATGAATGACCCGGACGGGCTGACGTCTTTCATTTATCAGAAAGGTCTCGGCCAAAGTTATGATCAGCAACTCCTGCAGAGCCGATATAATTAGTGTCGCTCCTGACGAGACACTGTCCAAGGAGATGAGTGTCCAGAGCCCAGAGGTCGAGCCCAACGGCATCACGCCGCTGCAGCAGATGTTGTCCTCCTGCTCGGGGGCTCTGATCACCTCCCTGTTTGTCACCCCTCTGGATGTGGTGAAGATCAGGCTACAGGCGCAGAAGAGTCCTTTTCCTAAAGGGAAATGCTTTGTGTATTGCAACGGCCTCATGGaccacctgtgtgtgtgtgagaatggcAACTCCAAAGCCTGGTATAAAGCCCCCGGGCACTTCTCGGGCACTCTGgatgcatttattaaaattatccAAAAGGAAGGTATTAGGTCTTTGTGGAGTGGGCTCCCACCGACACTGGTTATGGCCGTTCCAGCCACGGTCATCTACTTCACATGTTATGACCAGCTGCACGCGGCTCTGCGATCCAGGATGGGCGACGGTGCCAACGCCGCCCCGCTGGTGGCAGGAGCTCTGGCTCGAGTGGGCTCTGCCACCGTTATCAGCCCGCTGGAGCTGGTGAGGACCAAGCTGCAGTCGCGCCACCTGTCCTACCGGGAGCTGCGCGTGGCCGTGGGGGCCTCCATCGCTGCGGACGGCTGGCTCTCGCTGTGGAGGGGCTGGGGGCCCACGCTGCTCCGGGACGTGCCCTTCTCAGCGATGTACTGGTACAACTACGAGTGGGGGAAGGCATGGCTGTGCGAGCGCTACGGCACCAAGGAGGCCTCGGTCACCATGACGTTCGCAGCCGGAGCCGCATCTGGATCTatcGCTGCGATCGTGACGCTGCCCTTTGATGTGGTGAAGACCAGACGGCAGGTGGAGCTGGGGGAGCAGGAGGCTATGAACCTGTCTGCAAAGAGTTCCACCACCCTGCAGGTCATGCGGAGGATCGTGGCGGAGAATGGCGCAGGGGGGCTGTTCGCAGGGTTCCTGCCCCGGCTCATCAAAGTCGCCCCAGCGTGTGCAATAATGATCAGCACCTACGAGTTCGGGAAAGCCTTCTTCAGGAAACGCAACTGGGAGAGAGAGCGGGTGAACCTGCAGGACCAGGCCTGACCAGGGCAGGGGGACCCGGGGGAATGAAACTCCACTCCTGCCGACCCAGGTCTTACTGACAGAAAGAGGACGAAGAGGGGACTTGGATTAATCCAACTCGATAAGTgaacaatgtgtgtgttcagcAGCACCAGCACTCCCGGGTCTCGGTGCGTTGACGCTGTGGACAAGAGTTAAGTGGTTCGAGGTAAAACTATTTTTCTGATCCACAATTCTTCACCATCACGTGTAGAAATGCCAGATCGATACCGAGCACCGGCGATGCACATGTTAATTAAAGGAGTAGAAACTGGTGGAGAATTGATAATCAACACATACACCCACTGCACTGACCATTTGCATCGCGCTGGTCAGGACAGCCTCCGAGGCTCTTGGTACATCGTATTTTTACACAGATGGTTCAATGACCCTTTGGTGGAAGTTTGCCCTGAGATTATTTCCAAACAAGcactttcaatttaaacaaaatgtaccttcttagtaaaaaatgtttttatagaagtggggggaaaaaagccaaAGTATTATTACATGATGATTTAGTGTTACACTTGACTAGTGTGCACAATGAAGTATGATTGAAACAATGTATTCTAAATTCCGCATCAGAATGAGGCTACAATCCTACAGACCGGCGTCAAGCTGCACAAAACCACTGGTTTCTTTTTTGAAGTTCTCCTGTAGGTTGAGGGCATTTGCACAAAGCCACTCGGCTGCTAAAGGAAAAGCCGCTGTGATCACGGAAGGTGTTCGATACCTCAGGCTATTCTGGGTCTGTTAAATCAGCCGTGGTCTCAGACCACCCAGCGTTGTTCTGGGCAGGTCAACCCAAAATGAGTGCTAATCCAGCTCTGTGGACCAGCTGAAGGTTTTTTTAGGCAACTGGTCCCCAGACTGGGCTCTCGTCTGCTGTTTGGGATGGCGTGCCTCGAGTGTTGACCCCACCTGACCTCTCAGCATCGTGACGTCCACATGCTGGCGTGTTCCCCAAGTCTTTGCCCTCGGTTTGCTGATGTCACTCACTCGGAACGCACCCGTGCCACTCCATCCGTGTTGTCTGCCACTGTGTTCTCACCGTCGCCAAACTTCCTGATCCGCAATGGACGAGTTCTCTGGTGTGGATTGGGCTCATTACCTCTGCACTGTAAAGCCATGAATCCGAAGAAGAACAGATGTAATGTTTGAAACATTTGATTAGTCTTTCAAGCATGTCACTTGTtgattcagttttttatttgtataatttaaaatcattgGTGTAGTTTACCGTGTCTCGCATATCCATTTTCCTTCTTGATGCAGTGAACCACTAGCAATAAGCACGTGTTTAACACAGTAGTACCATACATTTTTATGGCAAAGAATCAGATCATCCTCTTCTTAATTATATGGTGTGTgtggaaacaataataaagatattTTTGCGATCTTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021491 True 2758 mRNA 0.51 11 19384029 19391754

Neighbor

gene id symbol gene type direction distance location
AMCG00021488 NA coding upstream 41205 19341820 ~ 19342824 (+)
AMCG00021484 NA coding upstream 76905 19299536 ~ 19307124 (+)
AMCG00021479 NA coding upstream 136351 19232128 ~ 19247678 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding upstream 163755 19202878 ~ 19220274 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding upstream 203508 19164678 ~ 19180521 (+)
AMCG00021493 NA coding downstream 30970 19422724 ~ 19446623 (+)
AMCG00021492 NA coding downstream 68710 19460464 ~ 19465577 (+)
AMCG00021496 NA coding downstream 78487 19470241 ~ 19471029 (+)
AMCG00021501 NA coding downstream 222441 19614195 ~ 19622221 (+)
AMCG00021505 NA coding downstream 521778 19913532 ~ 19918822 (+)
G86323 NA non-coding upstream 125174 19258458 ~ 19258855 (+)
G86309 NA non-coding upstream 157261 19224453 ~ 19226768 (+)
G86284 NA non-coding upstream 230747 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 704153 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 719496 18663193 ~ 18664533 (+)
G86367 NA non-coding downstream 343 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 56975 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 194235 19585989 ~ 19587369 (+)
G86454 NA non-coding downstream 438062 19829816 ~ 19837813 (+)
G86455 NA non-coding downstream 460615 19852369 ~ 19894619 (+)
AMCG00021485 NA other upstream 89250 19279765 ~ 19294779 (+)
AMCG00021472 NA other upstream 328926 19047049 ~ 19055103 (+)
G86121 NA other upstream 1134343 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1910633 17470325 ~ 17473396 (+)
G85869 NA other upstream 2379898 16997877 ~ 17004131 (+)
G86407 NA other downstream 108046 19499800 ~ 19501242 (+)
G86601 NA other downstream 950856 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 976399 20368153 ~ 20371536 (+)
G86616 NA other downstream 986669 20378423 ~ 20380424 (+)
G86688 NA other downstream 1275716 20667470 ~ 20667927 (+)

Expression


Co-expression Network