AMCG00021479


Basic Information

Item Value
gene id AMCG00021479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19232128 ~ 19247678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021479
CCGGCGGTTTGAGGGTTTGTCGGGGAGGCATTGCAGTGAAGCCGATGCCGAGCAAGACATGATCTGTTAAAAAGTTACAATGTGACGCTTCTGCCAACGTCAAGGTTTTCACATCACAACATCCTTTTGTCCAGCCGAGACATGTGGACATTAAGGCCTTTAGAGGCGGGCGGAGGGGAGCCCTATTACCTGCTGCCCGGCGGGGAGTACGTGGTGGGCCGGAAGAACTGCGCGGTGCTGCTCCAGAATGACCAGTCCATCAGCCGCATCCACGCTGTGCTGTCCAGCCAGGCCTGTCCAGCGCCCGCTCTCACCCTGAAGGATTCCTCGAAATACGGGAGTTTTGTGAATGATGAGCGTCTGCTAAGTGACGCCCCGAAGACACTCCAGTCCGGAGACAGGGTGACGTTCGGAGTCTTTCACAGCAAATTCAAAGTCCACTACGAGGCCCTGCTGGTGTGCTCGTCCTGCGTGGACGGGCATGGCAAGGTGGCTCTGGTTCAGGCCCTGCAGCCACTGGGTGGCCGGCTGGTCAGCAGCTGGACTCCAGCCTGCACTCATCTGGCCATGCCCACGACGATCTGTGCGCTGCTGTCTTGTCGGCCCATCGTGAAGCCAGAGTTTTTCACTGAGCTCTGCAAGGCCGTGCAGCTCCGACGCAGCCTCCCCCAAGCCGAGAGTTTTTACCCAGTTATTGACGAGCCCAGCATCGACCCAGCAGACATGGACCTGAATGCCCGGCCGGAGCGGAAAACACTCTTCCAGGGAAAGACCTTCATCTTTCTCAACGCCAAGCAGCACAAGAGGCTGAGCGGCGCCGTGGGCCTGGGCGGGGGGCAGGCCCGGTTGCTGCAGGAGGGCAGCGTGTCTGCATCTGTGCTGGAGACCCCGGGCAGCTGCGTGATTGACGTGGGGCCGGAGAACTCCCAGCTCCTGGAGTCCAGCTCTGCCAAGAAGTGGGTCGAGTCCATCGCACAGCTTCTGCGCAGGAAAGGCCTGCGCTTCATTCCCGAGGCAGAGATTGGTCTGGCATCCATCCACGTGTCCACGGAGACCTACTGCAACCCCGTGGTGCCCGGGGGCTCAGAAACGACTACCAAAGTGAGGTCAGCCATCCTGGGTCCCAGCCTCTCTCAGTCCATGGCCGTGGATGAGACCGTGATGCCTGCGGCCACCATGAACATCACAGCCTACGCCCCCGACACCGAGCCCTCTCAGCCCAGCACCAGGATGGAGGCGGGTGGGGTGACCCTGGTGGTAGAGACCCCGGAGAAGGAGCGGCGGAGGGGCGTGTTGTCACCGGGCAGCTTCGCGGTGAAGGACCCCCCCAGTGCCTGCGAGGTGCCCGAGGATCGAGGCGGAGACGACGGCCAGGTGTCTCAGCCCAAGCAGGCGAGGCTGACCACAGAGGAAGAGCCGAGACCCTCGTCCTCCTCGCTGGCCCAGTGCGGGCGGAGGGACGGCACTGACTCTGCGAGGGGCGGCTTGGCATATGTGGCCGCGCAGCTGGAGGTCTGCGCTTTGCGCCCCGCCGAGCCCCCCCAGCCGGACGGCAGCACTGGAGACACCCATCAGAACGGCCCGTccaggaagaggaaggagaTGGCTGGGGCTCCTGCTGCCGCGGTCCTGCCCAGGGTGGACATCGAGGACCTGGACTCCATCATGTCTGAGCCCATGGAGGAGGAGCCGGGGCCCCCTCTGAGCGCCAGCAAGAAGCAGCGGGTGGCGCCGGCTGTGGAGGTGaagcgagaggaggccactGTGCCGGTGGACTGCAGCCAGCCCGAGGTCTCCCGGGCCACCAGCGCTGTGTCCAGCATGAAGCAAGAGAAAGGAGAAGATCTCGCCGGCACAGCTGTGAAGCCGGAGGAGAGCGGCTATGTGTGCGCAGTGAAGAGTGAGGAGACCCTCCCGCGCAGCGTCGTGGTGACGGAGTTCAAGTCTCTGCTTGTCCGCAGACACTGCCGGCCCGGCGCCGCACCCCCACAGCTCAGCACCCCCAACGGGAAGAACTTCAAGAAGTTCAGGAAGGTGCCCGTCCCCGGGGTGGAGGGGCTGCCCCGCATCATTGGGGGCTCGGACCTGATCGCACACCGGTCCAAGAACTCGGAGCTGGACGAGTGGCTGCGGCAGGATGCTGTGgagAAGAGCCAGTATGACCGAGAGGAAGCTCTGGCTGAAGACATCTTCAGGTACGAACCCAAGGTTTCAAAAAGAAGATGAGAACCGCAGCCTTGGCAATCTACTTCACAGAACCGGACGCTTCTGTGCTTCTGTTTGTCCCTCATGGCTGAATTTCATGCGAACATGGGGTTCCTCAGCTCTGCAGTTTGATCCTGATCTCAGACACTGTTTCATTATTACAGTCCTCACTGATTCTGCTTCTCATGACATTTGTTATTAAACAGACCAATGTGTGTAAATCCTACAGCTAACAGATCAAACTAGTGAGATTAAATGGtgcctgtatatagtttgtatgtattgatataaATGTGGCCACATCTAGTGTGGAAACTGTGACAAACTAAACAGGCCCGTTCAAATTCCAAACCACAgtgattgtcttttttttttctactattAAGGAAATCTCTCTCTGATATAACTAACACAAATTTCGATGCAATTATTTTCCGCTCAAACATTGTAAATTTTACTGTCCAGGGGTTCTTTctcttgtgtgtatttgtgttgcacAGCTGCTCTGAATGTACTTCTGTTTTCCCcgattgaaatacaaaataaaccctACCAGCCTGCGAGAGAGAGTGCAAGATTCCCCCCGTACGCTGCGATGGCTGCTCCTCTCCTGGTACTGTTTGAAGTGTCTTGAAAAGGTTACCTTTGACCCCACAGCAGCTGACTGGGTCTGTGCACACTAAGAactgaaaatgtgctttaacaAAAGGTCCACTGACTTCAAGGCAAGGAAAGAGAAGCTTTtgtctgaaaaaaataactgtaaacttCTGAAACAATATTCTGAAaagattttatttgttcataataaaaaaagtatacaaaacaaata

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
K10867 NBN, NBS1; nibrin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021479 True 3037 mRNA 0.57 16 19232128 19247678

Neighbor

gene id symbol gene type direction distance location
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding upstream 11854 19202878 ~ 19220274 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding upstream 51607 19164678 ~ 19180521 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding upstream 112560 19107777 ~ 19119568 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding upstream 186278 19031291 ~ 19045850 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 675728 18555792 ~ 18556400 (+)
AMCG00021484 NA coding downstream 51858 19299536 ~ 19307124 (+)
AMCG00021488 NA coding downstream 94142 19341820 ~ 19342824 (+)
AMCG00021491 NA coding downstream 136351 19384029 ~ 19391754 (+)
AMCG00021493 NA coding downstream 175046 19422724 ~ 19446623 (+)
AMCG00021492 NA coding downstream 212786 19460464 ~ 19465577 (+)
G86309 NA non-coding upstream 5360 19224453 ~ 19226768 (+)
G86284 NA non-coding upstream 78846 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 552252 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 567595 18663193 ~ 18664533 (+)
G86217 NA non-coding upstream 613572 18615170 ~ 18618556 (+)
G86323 NA non-coding downstream 10780 19258458 ~ 19258855 (+)
G86367 NA non-coding downstream 144419 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 201051 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 338311 19585989 ~ 19587369 (+)
G86454 NA non-coding downstream 582138 19829816 ~ 19837813 (+)
AMCG00021472 NA other upstream 177025 19047049 ~ 19055103 (+)
G86121 NA other upstream 982442 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1758732 17470325 ~ 17473396 (+)
G85869 NA other upstream 2227997 16997877 ~ 17004131 (+)
G85787 NA other upstream 2518090 16656644 ~ 16714038 (+)
AMCG00021485 NA other downstream 32087 19279765 ~ 19294779 (+)
G86407 NA other downstream 252122 19499800 ~ 19501242 (+)
G86601 NA other downstream 1094932 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1120475 20368153 ~ 20371536 (+)
G86616 NA other downstream 1130745 20378423 ~ 20380424 (+)

Expression


Co-expression Network