AMCG00021473 (tmem55a,LOC107724355,LOC107702130)


Basic Information

Item Value
gene id AMCG00021473
gene name tmem55a,LOC107724355,LOC107702130
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19031291 ~ 19045850 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021473
CCCTCCCCCCTCTGCTCCGCCTCCAAACGCGGCGGCGCCGGAGCCGGAACGCCGGTGACTCATTGGTCGACTTCCAAGGATTGCAGGAAACCCACCGGAGCCGCCGCTGTTGTTGTTGCCGCTGCAGACATGGCCTCGGACGGTGTGGATGAGAGATCCCCTCTGCTGTCAGCGCCCACCTCCGGGAATGTCACCCCCACAGCCCCGCCGTACCTGCAGGAAACCAGCCCGAGAGccgAGTTGCCTCCTCCTTACACAGCTATAGCCAGTCCGGACACAGGCGGCGTGCCAGTGATAAACTGCAGGGTCTGCCAGTCCCTCATCAATCTGGACGGCAAGCTTCATCAGCATGTGGTTAAATGCACTGTGTGCAACGAGGCCACGCCAATCAAAAACCCACCAACTGGAAAGAAGTATGTGAGATGTCCGTGCAACTGCCTACTCATCTGTAAAGACACATCTCGTAGGATAGGATGTCCACGCCCCAACTGCAGGCGGATTATCAACCTTAGCCCCGTGATGGTGATCCCCGAGGAGCAGCCGGCCCAGCCAGCTCTGCCCGTGCAACCCGAGGGCATGCGTGTGGTGTGTGGGCACTGCGGGAACACGTTCCTGTGGATGGAACTCAGATTCAACACATTGGCAAAATGCCCACACTGCAAAAAAATATCTTCAGTTGGTAGCGCTCTGCCCAGGAGACGCTGCTGCGCCTACATCACCATTGGCATGATCTGCATCTTCATTGGCGTCGGATTAACTGTTGGTACCCAGGACTTTGCTAGAAGCTATCATGCCACGTATGTGTCCTGGGCTTTCGCTTACCTCCTGGGTTTAATCTGTTTGGTCCGCGCCTGTTACTGGGGAGCCATTAAAGTAAGCTATCCAGAAAACAGCTTTGCATAGACTTGCCTCATCGAGTGAACCTTTCCTttgatgtttctttgtttcttgtgGATTCAGACGGTTTGGCAGTGTTGGATGCTAGACGGTGGACATTTTACACGTTTTAAGTATTGAGTTTTGTTACCAACTAGACCAAAAGAGGTTATCTTTTAAGAACAATTGCCCATTGCACTACATtttatgcaattattattttatgttgctGCTAGATTGCCCAGCTCTAATGACAACAGCTGAGTTTTCATGTATGAAACTGcctgtatgtgttttttgttttttttagaatgaactgtatgacattttattctgttaaaTCCATTTGTGCCATTATTGAAAAACTATATAAAGGAACAGGTGTTAACCTTTCAAAACACTTCATGTTTGTACTGGTATCTTAAAATTAACTTAATGCTATACTGCTTGCATTCAGTTTAAgcaataaactttatttttttgtcatttgtgaaATTGCTCGGCACATTCACGTACTGAACTCTTTAACAATCTCATTGCCTTCTAACAGCTATGTaaatggtttagttttttttagttttttttaccaGAAGTGTTGGAGATCACTCATGTGCATGATTTTCTGCACCCTTGTTTGATCTGCCTATTTCAGAAGTGTTAAAGTATCGATCCTCACATTGTGCTCCCTGTAATGTATTGTACAAACTCTCCCTGCTTACAGCTTGTTTCTCGGATCTGTGCAGAACAAAGAGTAGCTTTACAATAGTTCATCATTATGTTGAGAAAATGGGCACAATAAGTATCTTGTTCTgaatgtgaagaaaataaatctatttgtacattaataattaaatacactaaAAGCAGTAGATGAAGTTGGAATATGCcttgtgtctttttaaaaagga

Function

NR:

description
PREDICTED: type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X2

GO: NA

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021473 True 1784 mRNA 0.45 7 19031291 19045850

Neighbor

gene id symbol gene type direction distance location
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 474891 18555792 ~ 18556400 (+)
AMCG00021465 NA coding upstream 491143 18488903 ~ 18540148 (+)
AMCG00021463 taf1 coding upstream 643768 18338056 ~ 18387523 (+)
AMCG00021455 NA coding upstream 843129 18177180 ~ 18188162 (+)
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding upstream 860747 18167847 ~ 18170544 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 61927 19107777 ~ 19119568 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding downstream 118828 19164678 ~ 19180521 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding downstream 157028 19202878 ~ 19220274 (+)
AMCG00021479 NA coding downstream 186278 19232128 ~ 19247678 (+)
AMCG00021484 NA coding downstream 253686 19299536 ~ 19307124 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 351415 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 366758 18663193 ~ 18664533 (+)
G86217 NA non-coding upstream 412735 18615170 ~ 18618556 (+)
G86202 NA non-coding upstream 481532 18549428 ~ 18549759 (+)
G86118 NA non-coding upstream 801625 18229465 ~ 18229666 (+)
G86284 NA non-coding downstream 107165 19153015 ~ 19153282 (+)
G86309 NA non-coding downstream 178603 19224453 ~ 19226768 (+)
G86323 NA non-coding downstream 212608 19258458 ~ 19258855 (+)
G86367 NA non-coding downstream 346247 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 402879 19448729 ~ 19449107 (+)
G86121 NA other upstream 781605 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1557895 17470325 ~ 17473396 (+)
G85869 NA other upstream 2027160 16997877 ~ 17004131 (+)
G85787 NA other upstream 2317253 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 2438318 16590181 ~ 16592973 (+)
AMCG00021472 NA other downstream 1199 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 233915 19279765 ~ 19294779 (+)
G86407 NA other downstream 453950 19499800 ~ 19501242 (+)
G86601 NA other downstream 1296760 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1322303 20368153 ~ 20371536 (+)

Expression


Co-expression Network