AMCG00021465


Basic Information

Item Value
gene id AMCG00021465
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18488903 ~ 18540148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021465
ATGGCAGTGTTCTCTCTGCGCAGTATCCTCCAGAGGGAGATCTTCACCCCACGGGAGGAGCGGCTGCTGGGGGTGTCCTTTGTCTGGAAGGCCAGCAGGAAGAGCAAGAGTGCCATCCTGTGTGCTGCAGTGAGCTCGGAGCTGCCCGTGCAGGTGGTGCTGGTTACGGTGAAGGCAGTGCGGGGGCACTACAAGCTGTCAGAGCACTGGCAGGCAGCAGAACTCACCCTGGTGGATGGGAAGGATGTGGTGAAGGAGACAGCTGAGTTCCACCTGCACCTGGACAAGGTGTACAAGTGGGTGTCGAGCAGCGTGGGGGAGAAGATGACCTTTGTCACCTGCCTGTGGAAGATCAACCAGCGGTACCTACAGGACAGGGTCAAGTTCATCAACATCAGCCCAGCCATCCTGGAAGAGGAGCGGGAAATgatggagaaggaggaggggtACCAGGAACTGACGGCACGGGAGGCGGATAATATTGATCGTTTGATGAAGCAGAGCGAGCTGTTGGTGGCTGATGCAAAGGCCTTCACACAGCTTCTGCTGATGGAGCTGCAGGCCCTGGACCAGGAGAACCTGCTGTCCCTAATGGCAGTGGAGCAGCGGGTGGGCAgcctggaggagctgctggagcAGGGGCTGGCAGAGGTGGAGCTGCTGGAGCTGGCAGTGGCAGAGCAGGATGGGCTGCTACGCTCGGTGCAGAGACAGATGGAGCACCTGCACATGCGCAGCACCTGGCTGCAGCGAATTGACCGGAACCACAGCCTGCTGGAGTCTGAGCTGGCCTACCTGGTGGACAATCTGACTCTGAGTGAGAATGACATGCAGATCCTGAGTGAGGGGGACCTGGGACAGCCGGTTCAGGTGGAGGCCTGCAGTGCAGCGGTGCAAGCTCTGACACGCTGCGCCGGCACCCCTCTCACACCAGCAGCCAACCTGCTCTTCCCTGGATGTGTGGTCATCCTGTTCATGGAGTTTTCAAACACCAGGGGCCAGCTGACACACACTGCTAGGGAGCAGACGGTGAGGGGAGCAGGCTCTGTCTCCAGGAGTGCTGAGCTCCCCTGCTGCTTCAGAAAGAGGAGAGGTCAAGGGCAGCGGCGTCTGCAGGGTGTGGCTGAGCAGCTGATCCGGTTCGAGAGCCTGCGGCAGAGTTTCGAGCAGCGCTGTATCATGCACATCAACTCCGCCATTATTGCACAGGCCATGGGGAATGGAGCCACTCTGGAGGGGAGAGATGGTTTGGTTCTACCCAGGCCCACGGGTCGACATGCACAGCTACTGCAGTACACACCACTGATGCGTTGGCTGAGAGAGACCAGCCCAGCCACCTGCCAGCATCTACAGAAGGTGTATACTGAGAGTATTGGCAAGCTGTATGATGGACAAATTAAGGACTTCTTTGATGCAGCCAAATTCAAGGTGTCTGGAGTCAAGGACACCAAGATATTCGGTGTGGTTCCAGTGTTCCAGAGCTCAATGGACAGAGACATCAGCAGCAACTCTCTGGCATCCTGCACAGAGGGGGTAGCAGGCAGGATGGTGCAGCATGTGCTGATGGAGTTGCGGGAGGTGTGCATGGCAGAGGAGCAGTTCCTGTCCACTTTCTTTGCCTTGGACAGAGGGGAGCAGGACAACGGCTGTAGCCCTGGCGCCGAGGCCCCTGCTGGGACACCAGGCTGTGGAGCTGACCCAGCACAGGCCAGCGTCTCTTTTCTGGCAGGAGGCAGCCCAGGTGACTCGGACTGTGTGCAGGGGGTGCTGGGCTGTGTGGAGCCCCGGCTGAGCGCTCTGATCAGTTTGTGTTTGAAGAGCGAGCCGCTCAGCTGCCTGAAGGTACTAAAGACAGCAGGACAGCACCTGCCCAGTGCCCTGTCCAGCCCTTCCACCTCCGTCTACTGCTCCCTGCTCCACAGCAGCCTGCAGCTGGGCCAGCAAAGCCTGCAAGCACATACTGAGTCTCTGTGCCGGGAAATCGAGAGCCACCGCGTTTCCAGGAAGGCACGGATGGGGGTGCTTCCATTTGTGTGTCGGCTGgaagagtttgtgtgtgagggggAGCGTGTGCTGGGTGGGGAGGTGCAGCGCTGGGGGCTGGACGCCGCGTACACACAGCTGTTCTCCGCCGTGTTCAGGAGCTTGGAGAGCCTATCTTCCCAGAGCCTGCGGACAAACCCCCTGGTGGTCAAGCTGCTGAACTTCCACCGGCTATGTCACTTCCTGTCCCGCTTGGGGCTCAAGCAGGAACTGCGCAGGGCAGTGGAGCGCTGCCCTGGGCGAGCCGTGCGCCGGGCACTGGAGACAGTGTACAGCAGGGTGAGCAGACACCTGGCCGAGGACGAGAGCCTGCTGCAGGTGGTGTGGAAGGCCATTGAGGAGGAACTGGTGGCGCAGTGTCGTGGGTTTGAGGAGCTCATCCAGAAGTGTTACCCTGTGGCCAGGATCTCACTGGACTTCACTGTGCAGCACCTGCTGGAGTACTGCAGACCAGACAGACAGAACACCCAGACATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021465 True 2520 mRNA 0.60 18 18488903 18540148

Neighbor

gene id symbol gene type direction distance location
AMCG00021463 taf1 coding upstream 101380 18338056 ~ 18387523 (+)
AMCG00021455 NA coding upstream 300741 18177180 ~ 18188162 (+)
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding upstream 318359 18167847 ~ 18170544 (+)
AMCG00021453 NA coding upstream 376682 18109078 ~ 18112221 (+)
AMCG00021450 NA coding upstream 421129 18061621 ~ 18067774 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding downstream 15644 18555792 ~ 18556400 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding downstream 491143 19031291 ~ 19045850 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 567629 19107777 ~ 19119568 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding downstream 624530 19164678 ~ 19180521 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding downstream 662730 19202878 ~ 19220274 (+)
G86118 NA non-coding upstream 259237 18229465 ~ 18229666 (+)
G86117 NA non-coding upstream 262661 18222835 ~ 18226242 (+)
G86034 NA non-coding upstream 840372 17648274 ~ 17648531 (+)
G86020 NA non-coding upstream 872450 17614614 ~ 17616453 (+)
G86018 NA non-coding upstream 903431 17581307 ~ 17585472 (+)
G86202 NA non-coding downstream 9280 18549428 ~ 18549759 (+)
G86217 NA non-coding downstream 75022 18615170 ~ 18618556 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding downstream 123045 18663193 ~ 18664533 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding downstream 138965 18679113 ~ 18679876 (+)
G86284 NA non-coding downstream 612867 19153015 ~ 19153282 (+)
G86121 NA other upstream 239217 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1015507 17470325 ~ 17473396 (+)
G85869 NA other upstream 1484772 16997877 ~ 17004131 (+)
G85787 NA other upstream 1774865 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 1895930 16590181 ~ 16592973 (+)
AMCG00021472 NA other downstream 506901 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 739617 19279765 ~ 19294779 (+)
G86407 NA other downstream 959652 19499800 ~ 19501242 (+)
G86601 NA other downstream 1802462 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1828005 20368153 ~ 20371536 (+)

Expression


Co-expression Network