AMCG00021454 (cetn2,LOC108436166,LOC107710936,LOC107663123)


Basic Information

Item Value
gene id AMCG00021454
gene name cetn2,LOC108436166,LOC107710936,LOC107663123
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18167847 ~ 18170544 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021454
CCGAGGCCGGGGTTGTCGCTGTCACTCGCTCTGCGCTGTGTAGTAGTCATGcacccccccccaacactcTTCTCTAAACTCCCTCAAATGAAAAATCTGTCCTCCATGCACACTTCCCCCCCCAAACACCTTCCCCAGGCTTCCAGCTATAAGAAGCCGTCTCTGGGAGCGACGGCTGCGAGGAAGAGGCCGGGCCCGAAGCCCGAGTTGACGGAGGAGCTGCGGCAGGAGATCCGCGAGGCCTTCGAGCTGTTTGACACTGATGGTGCCGGACACATCGACGTCAAGGAGCTCAAGGTGGCAATGAGGGCGTTGGGCTTTGAGCCGAAAAAGGAAGAGATCAAGAGGATGACCACGGAGATCGATAAGGATGGAACAGGCAAGATCAACTTCAGCGACTTCCTGGCCATCATGACGCAGAAGATGGCAGAGAAGGACTCTAAGGAGGAGATCCTGAAGGCTTTCCGGTTGTTCGATGATGACGAGACAGGAAAGATCTCCTTCCGCAACCTGAAGCGCGTGGCTAAGGAGCTGGGAGAGAACTTAACCGATGAGGAGCTGCAGGAGATGATCGAGGAGGCGGACCGCGATGGGGACGGGGAGGTCAGCGAGCAGGAGTTCCTGCGCATCATGAAGAAGACAAGCCTATACTGAGGGCCGGAGGGGAGTGAGGGGGGGCAATATAGGACCACTCCCTGACTGAACCATTCCACACCTCAAACTGTGTACAGAGCCCCCATTCCCCCTCCccatctccttctctcccagCCAGTGTCCAGTGCTTAATGAGTAAAGAATCCATTCACACCAGGCGCCAGGCTGACTGTCAGACTTATCGCTCTACAgcactaatattattatttatgtttaagaaaatgGTCTTGGtggagcaaaaaaaaatactctgtgGTTCCCAGTTTCTAGTCTAACCAAACCGTGCCAAAGAGCTGGCTTTAGTTCTGCCTTTACTGTCTTTCCCCACATATCCTGCTCCCGGACCTATAATGTGGGGCTAAGCATGTGAAGCTCTGGCCTACAGTTAAAATGATTGTAAGTGTTGTTATTCTTTTCATTACTGTTTATTATTCTCCGGATGACTTTTGAGAAGTCAGAAAAGAAGCCAAGCCTGGCAATGAGAACCACTGAGGGGGTCCAGCCGTCAGggaccaccccccccc

Function

symbol description
cetn2 Predicted to enable calcium ion binding activity. Predicted to be involved in centriole replication; mitotic cell cycle; and nucleotide-excision repair. Predicted to be active in centriole and centrosome. Is expressed in pronephros. Orthologous to human CETN2 (centrin 2).

NR:

description
PREDICTED: centrin-2-like

GO: NA

KEGG:

id description
K16465 CETN1; centrin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021454 True 1178 mRNA 0.53 5 18167847 18170544

Neighbor

gene id symbol gene type direction distance location
AMCG00021453 NA coding upstream 55626 18109078 ~ 18112221 (+)
AMCG00021450 NA coding upstream 100073 18061621 ~ 18067774 (+)
AMCG00021451 NA coding upstream 117443 18033191 ~ 18050404 (+)
AMCG00021440 znf711,LOC107569605,LOC107684921,LOC107746145 coding upstream 660717 17494793 ~ 17507130 (+)
AMCG00021439 NA coding upstream 675188 17483091 ~ 17492659 (+)
AMCG00021455 NA coding downstream 6636 18177180 ~ 18188162 (+)
AMCG00021463 taf1 coding downstream 167512 18338056 ~ 18387523 (+)
AMCG00021465 NA coding downstream 318359 18488903 ~ 18540148 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding downstream 385248 18555792 ~ 18556400 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding downstream 860747 19031291 ~ 19045850 (+)
G86034 NA non-coding upstream 519316 17648274 ~ 17648531 (+)
G86020 NA non-coding upstream 551394 17614614 ~ 17616453 (+)
G86018 NA non-coding upstream 582375 17581307 ~ 17585472 (+)
G86007 NA non-coding upstream 635027 17532619 ~ 17532820 (+)
G86006 NA non-coding upstream 640721 17526726 ~ 17527126 (+)
G86117 NA non-coding downstream 52291 18222835 ~ 18226242 (+)
G86118 NA non-coding downstream 58921 18229465 ~ 18229666 (+)
G86202 NA non-coding downstream 378884 18549428 ~ 18549759 (+)
G86217 NA non-coding downstream 444626 18615170 ~ 18618556 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding downstream 492649 18663193 ~ 18664533 (+)
AMCG00021441 NA other upstream 694451 17470325 ~ 17473396 (+)
G85869 NA other upstream 1163716 16997877 ~ 17004131 (+)
G85787 NA other upstream 1453809 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 1574874 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 2094226 16063499 ~ 16073621 (+)
G86121 NA other downstream 77946 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 876505 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 1109221 19279765 ~ 19294779 (+)
G86407 NA other downstream 1329256 19499800 ~ 19501242 (+)
G86601 NA other downstream 2172066 20342610 ~ 20401249 (+)

Expression


Co-expression Network