AMCG00021455


Basic Information

Item Value
gene id AMCG00021455
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18177180 ~ 18188162 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021455
tttctctgtctctgggTGATTTACGCGTCTTCGTCACACATCGCTCGGTTATTGTTTTGCGCGGGTGTGCACACTTTGCAGCCGGTGGATGCGTGACCCGGTGACGTCTGTTCCGGCTGCGTTCATGCCGACGCCGACCATGGACAGTTTCGTTGCAGAGTCTGCGAAAAGTCTGCGCAGACTCTGCAAAGTATGCGTGTCGTGAAGGCGGCCAGTGTCTTCACGTCTAGTAATTGATTTTGAATACAGCCTATGAGCGTTTACGTGAAGAGGAAGTGATGTAAGCACTGTTTCCGGTGATGCCAAGTTTGAATGTTCTTTAAATTAAAGGATAGCGACGAAGAGAGATACAGCACCAGGGCAATACAAGCGCGAATTTCTCATAATAACGACAAGAATACGAATAAAAATAAGAGCAACGATAATAATCCATTGTGCGGACAGACACCACCCAGGACGAAGTTTAAAAGTGCAGTGAAGCTGAGGAGTACGTCCTGCCTGCGCCCGTGTATCCTGTACTGTGTTGGGTGTTGGCTTGCCAGCAGAGGGGCAGCGATGAATGTTGAGACTCGGGACCTGTTCCTGCGTGTGGCCGGGAAGCAGGGCTGGTTGGTGCCAGGAGGACTGGACTCTGCAGAGGAGGAGCTGCTCAGGAGCATCGGTGCGGGAGGCTGCACGCCGCTGAGGGTGATGGGCTCCAATGGGGAGGAGGGTGACCCTAGCACCCCCAAGGCAGAGTGCCACCCCACCCAGCTGCTGCTGTCAGACAGTGAGTGGGAAGGCTCCTCGGGGAAGGAGAACTGCAAGGCGGTATGCTGGCAGAACCGAACCCAGCTAGACTCCAGCGATGATGACTTCGACCAGTTCTTGATAGAGAAGGCCACGCCCAGGACTATACCCCAACGGGAGCGTCGTCGCCCACTGAACACACATAGTCCCAGAGTCCAGGTGCTGAGCTCTGACAGTGACAGCTTCGAGGACTTCCTGAGCCGTGTGCGGACACCGAAGTCAAAGCCTCATGTGTCACTAGGGAACAGCAGCGATGACAGCCTGAGGCACTTCATTGTGAATAGCTGCTCCTCTGATGAAGACTTTGCCCCTGACAGGAGGAAGAAGCAGTTAACCTCTGCCAAAGATCTCTGCCGTCCCCCCCTCAGCCAGCCTGCGGTCCGCCGCCCCCCCTCCCAATGGGAGTCTCCAGTCTTCATCAGCAacagcgaggaggaggaggagggtagtgttgggggtgggggtttggTAATGAGGAGTACCTGGGTGTCTCAGAAAAGGGGCAACTCCGCAGGGCAGATAGGTAGGCCCATGAAAGATGCTCAGCCCCGGAAGGCAGCGAGCGAGAGAAGGCCGCGCCAAGCCCCCAACCCAGGATGCCACCCAGCCTCGGGCAGCTCTAGTGAGGAGGAGTTTGAGTCACTGCTGGACCGGATCAGGAAAAACCACAGCCTAGGCACCAGCGTCTCCCACACCCCCCTCACCTCTGCAGAGCCAAGGAGCTCGCTGTCCAAGCCCAGTGTCCTGCCAGAGCAGGTGCCGAGAGGTCGTCACAGGGTGCAGCCGAAGGTGACCCCTGGTCAGACAGCGGTCAGTCGGCCGTCAGGAAGCCACACCAAGCCCCGGCCTCCCAACAGTAGCAGAGTGGCGGTGTGCCAGACTCCTGGCTGTTTCCTGCAGGCACTGTCTGACCTCACCTCTCACTATGCCAAGAACTTCAAGCAGCATCGGGAGGAGCTGAGCAGCAAGCTGTACCAGCTCTATAACAGCACAGTGTTTGACAGCAAGtTGCCCAGCTCCATGTCACTCTCCTGGAACAAGAAGATGCGCAAGACGGCGGGGTACTGCGTGTCAGGGATGGAGCGTGGTCCGGGGGGACAGCGCTATGCACGCATCGAGCTTTCTGAGAAAGTGTGCGACTCAGCAGAGCGGCTGAGGGACACGCTAGTCCATGAGATGTGTCATGCAGCCACCTGGCTGGTGCATGGGGTGCGCGACGGGCATGGACGCTTCTGGCAGCTGTTTGCCCGCAAGGCTGTGCTGGCACACCCTGAGCTGCCCGTGCTGGTGCTGGTAACGCCGTCGCGCACGCGAGGCCCCACCCCCTTCGCCACATTTGTGAAGGAGCACTACAGCACCACACGGCAGGAGCTGGGGCAGAAAGGGTCACAGGCTCACGCAGAGGTCATGCGCAAACTCAGTGCAGACTTTGCTGCCCAGACACGCCTGACTGAGTCCTGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021455 True 2250 mRNA 0.58 13 18177180 18188162

Neighbor

gene id symbol gene type direction distance location
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding upstream 6636 18167847 ~ 18170544 (+)
AMCG00021453 NA coding upstream 64959 18109078 ~ 18112221 (+)
AMCG00021450 NA coding upstream 109406 18061621 ~ 18067774 (+)
AMCG00021451 NA coding upstream 126776 18033191 ~ 18050404 (+)
AMCG00021440 znf711,LOC107569605,LOC107684921,LOC107746145 coding upstream 670050 17494793 ~ 17507130 (+)
AMCG00021463 taf1 coding downstream 149894 18338056 ~ 18387523 (+)
AMCG00021465 NA coding downstream 300741 18488903 ~ 18540148 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding downstream 367630 18555792 ~ 18556400 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding downstream 843129 19031291 ~ 19045850 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 919615 19107777 ~ 19119568 (+)
G86034 NA non-coding upstream 528649 17648274 ~ 17648531 (+)
G86020 NA non-coding upstream 560727 17614614 ~ 17616453 (+)
G86018 NA non-coding upstream 591708 17581307 ~ 17585472 (+)
G86007 NA non-coding upstream 644360 17532619 ~ 17532820 (+)
G86006 NA non-coding upstream 650054 17526726 ~ 17527126 (+)
G86117 NA non-coding downstream 34673 18222835 ~ 18226242 (+)
G86118 NA non-coding downstream 41303 18229465 ~ 18229666 (+)
G86202 NA non-coding downstream 361266 18549428 ~ 18549759 (+)
G86217 NA non-coding downstream 427008 18615170 ~ 18618556 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding downstream 475031 18663193 ~ 18664533 (+)
AMCG00021441 NA other upstream 703784 17470325 ~ 17473396 (+)
G85869 NA other upstream 1173049 16997877 ~ 17004131 (+)
G85787 NA other upstream 1463142 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 1584207 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 2103559 16063499 ~ 16073621 (+)
G86121 NA other downstream 60328 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 858887 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 1091603 19279765 ~ 19294779 (+)
G86407 NA other downstream 1311638 19499800 ~ 19501242 (+)
G86601 NA other downstream 2154448 20342610 ~ 20401249 (+)

Expression


Co-expression Network