G88161 (si:dkey-218f9.10,trappc9,LOC107669949)


Basic Information

Item Value
gene id G88161
gene name si:dkey-218f9.10,trappc9,LOC107669949
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27888558 ~ 27982127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110035
GCCGTAACAGCCCTTTGCCTACTCTCATTCCCTTAAGCACTGCGGAGTGAGAGACGTCCTGGTGAATGGGAAGCCCTGTGATTGTGATATTGTAGCTGATTGCAACGTAGGAGACCCTGTGCCCTTGGAAGTGAAGCTGACCAATGGGAGTAAGCAGGCTGTGGGCCCCTTCGCCCTGACCATCATTCCCTTCCAGGACTACCAGAACGGAGTCCACAACTACGACCTGCAAGATGCTGTCACCTTCATCGGCTCCAACACCTTCTACATTGACACGGTGAATCCTACAGAAAACTGCATCTGTGTTGGGGCTCTTCTGTTCCTCTACACTGGAGACTTTTACCTGAACATCAAGTTTCAAGATGACAACGCGGGCCGAGAGCTTCCTCTGGCCTGGTTCTGCTTACCCAGCGTTCACATCAAAGCCCTGGACCCGGCGCTCCAGCCCAACTCCAAATGATCAGTCCTCCCCACTGCATCCTCCCTCTCAGGCTTCTGTAAATCTCGGGTTAATGTTTATTGAAGCAACCGTCATCCGCTGAGAAAGTAACACTGCAGAGACTCAACTGAATGAAAAGTAAATCCAAAACGGCTTTGCAATTTATCTGCACATCTCCTACAATGTATCGTGCAATATTTATCACAGTTTACTTCATTATGTTTTCTGGTCTTACTTGTTGAGTACTGTTGTCTTTTGgccagggattttttttttttgtattatttttgtataatttgacGTAAttagcagaaacaaaatgtcacCTTCTTCTGAAATGATTGTCCTTATCATAGGTTTaaacagtatatgtatatatatccaaGAGCAATCTATGTTTGATAACATCACTCATTGGAAAACAggcaattgaaaataatatacaaactaTGCCTCAGTAATGTACTATACATTTGTCTCTGATATGGACACTATGTTACATAAGGATGAGATTGCAGTACCACCTCTGCTGGAACAAAATGAATCACTGAACGATGTAAGCATATCTCTTAAAGTTACTTTAGGCACAGAGTTCCAGAATGGCTTTGATCACATTGAAAATGGGTTAAGTAGTCTCAGTTTAGCGATTGGAAACAGGCATTATAGAATTGTATTTGAGCAGCAGTTTCAGGCACGGAGGGAGATAGCATAGATTATGTCTGGGTTTTGGCTCGAGTGAACTCAATCTGAGCCCGTGCATTGGTTTATTAGCCACTGAGTAGAGTAATCTGTTGTAATCCCTTATGGGTATTCCTGTAATCAGATGCCAGTGAAAATAAGGCCACATTACTTCACTTATTTAGGTTCTCACCATTTTATTTGGATggggaaatgttttattcttagTTGTTCCTTCAGATGTGTGGTCCCAGGAAGGTAATTGTGGAATGAAATGTAGCAGAGCATATCTCGGGCAAGACATCCTACTGTCCACATGTTGTTACccattaaataaaccatattATCAATAAGTGAGTGTTATTTGCTCTGCCACACTAAACAGTGCAGTGAACAGCATCTGACAGACCTTTTAACCCCAATAATGTTGACATAAAGCCAGTATATTGAAATAGGACCCTGCTGTCAAGAAGCCTTGGCATCGCTTCACAATTTGCTCAACAAAGACATGCCACCCCACCTATATTCTACCCTGTCTGAAATGAGAGGTCTCTGTCTCAAACCTTCAACTCAATACATTCAGgtatttgaagaaaatgttgtgaagCCAAGGagtgtgtataaaataaagcattacattttgatatttcCATTGCCAACTTTTTGAAATCAGTTTCATAAGAATGATTGTAGATCAGAAAAGAATAATGTTGTGTAGTCTTGCACACTGTAATTCCTGATGGACTTCTCTCTTGGAGATTACCAACCAATATGCCAATTTTCTGGGTTATTTAGCTGCTTTGTGATCTGTGTGTTTTAGGGGATACAGTTGCTTCTAGTGCGGTTTGACCTTTCTCGTTGGAATGCAGTACCATtgttaatataaattgaaatgcCTGTAAAATTCAACATTGTGAGTACCTACATTTCAGCACGGTTTtatgtgaataataaaaattaatgaaGGTG

Function

symbol description
trappc9 Predicted to be located in Golgi apparatus. Predicted to be active in trans-Golgi network.
si:dkey-218f9.10 Predicted to be located in Golgi apparatus. Predicted to be active in trans-Golgi network.

NR:

description
trafficking protein particle complex subunit 9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110035 True 2086 lncRNA 0.41 3 27888558 27982127

Neighbor

gene id symbol gene type direction distance location
AMCG00021750 trappc9 coding upstream 26203 27817083 ~ 27862355 (+)
AMCG00021749 LOC106570238,LOC102307979,LOC102294850 coding upstream 115031 27727793 ~ 27773527 (+)
AMCG00021748 trappc9,si:dkey-218f9.10,LOC107681624 coding upstream 208215 27643284 ~ 27680343 (+)
AMCG00021746 ago2,LOC107591597 coding upstream 268266 27612761 ~ 27620292 (+)
AMCG00021742 NA coding upstream 305293 27552085 ~ 27583265 (+)
AMCG00021754 kcnk9,LOC107727349,LOC107669952 coding downstream 56751 28038878 ~ 28189161 (+)
AMCG00021753 NA coding downstream 224377 28206504 ~ 28212926 (+)
AMCG00021758 fam135b,LOC102788634 coding downstream 335145 28317272 ~ 28338520 (+)
AMCG00021763 NA coding downstream 524250 28506377 ~ 28509474 (+)
AMCG00021761 NA coding downstream 527502 28509629 ~ 28510035 (+)
G88150 NA non-coding upstream 256904 27627052 ~ 27631654 (+)
G88151 NA non-coding upstream 266678 27620356 ~ 27621880 (+)
G88145 NA non-coding upstream 293988 27592630 ~ 27594570 (+)
G88076 NA non-coding upstream 478871 27408859 ~ 27409687 (+)
G88045 NA non-coding upstream 692688 27195652 ~ 27195870 (+)
G88225 NA non-coding downstream 715751 28697878 ~ 28698085 (+)
G88232 NA non-coding downstream 792744 28774871 ~ 28775193 (+)
G88237 NA non-coding downstream 848779 28830906 ~ 28831323 (+)
G88248 LOC101154678 non-coding downstream 920271 28902398 ~ 28902614 (+)
G88249 NA non-coding downstream 939502 28921629 ~ 28969948 (+)
AMCG00021745 NA other upstream 251474 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 1319410 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1691482 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 2018363 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 2135305 25752357 ~ 25753253 (+)
G88238 NA other downstream 796188 28778315 ~ 28778733 (+)
G88276 NA other downstream 1078760 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1282700 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 1396448 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 2285275 30267402 ~ 30407772 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013780 trappc9 coding NC_007130.7 CM002903.2 4443285 ~ 4447733 (+)