G88248 (LOC101154678)


Basic Information

Item Value
gene id G88248
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28902398 ~ 28902614 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110138
tggcctccatcatccgtaaatggaagaagtttggaaccactaggactcttcctagagctggccgcccggccaaactgagcgatcaggggagaagggccttagtcagggaggtgaccaagaacccgatggtcactctgacagagctccagcgtgtctctgtggagagaggagaaccttccagaagaacaaccatctctgcagcactccaccaatcagg

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110138 True 217 lncRNA 0.55 1 28902398 28902614

Neighbor

gene id symbol gene type direction distance location
AMCG00021759 NA coding upstream 72021 28827986 ~ 28830377 (+)
AMCG00021760 NA coding upstream 98222 28767415 ~ 28804176 (+)
AMCG00021762 NA coding upstream 391583 28510456 ~ 28510815 (+)
AMCG00021761 NA coding upstream 392363 28509629 ~ 28510035 (+)
AMCG00021763 NA coding upstream 392924 28506377 ~ 28509474 (+)
AMCG00021764 NA coding downstream 88976 28991590 ~ 29005897 (+)
AMCG00021765 NA coding downstream 104782 29007396 ~ 29021741 (+)
AMCG00021766 cpsf1 coding downstream 122949 29025563 ~ 29041941 (+)
AMCG00021768 NA coding downstream 173487 29076101 ~ 29095261 (+)
AMCG00021769 NA coding downstream 307663 29210277 ~ 29223312 (+)
G88237 NA non-coding upstream 71075 28830906 ~ 28831323 (+)
G88232 NA non-coding upstream 127205 28774871 ~ 28775193 (+)
G88225 NA non-coding upstream 204313 28697878 ~ 28698085 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding upstream 920271 27888558 ~ 27982127 (+)
G88150 NA non-coding upstream 1270744 27627052 ~ 27631654 (+)
G88249 NA non-coding downstream 19015 28921629 ~ 28969948 (+)
G88306 NA non-coding downstream 376563 29279177 ~ 29280833 (+)
G88307 NA non-coding downstream 395223 29297837 ~ 29298080 (+)
G88308 NA non-coding downstream 405265 29307879 ~ 29315559 (+)
G88352 NA non-coding downstream 473907 29376521 ~ 29388601 (+)
G88238 NA other upstream 123665 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1265314 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2333250 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 2705322 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 3032203 25843694 ~ 25870195 (+)
G88276 NA other downstream 158273 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 362213 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 475961 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 1364788 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1547343 30449957 ~ 30468920 (+)

Expression


Co-expression Network