G102439 (vps13b,LOC107671824)


Basic Information

Item Value
gene id G102439
gene name vps13b,LOC107671824
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26445317 ~ 26446288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU151434
CAGGCCTGCAGCGCTCGGTCCAGCGTGTGGACGGTGTACTGGCCGGCGGCGGCGTGCAGCGGCTGCAGAGTGGTGTCGCAGTGCAGCGTGcggcgcgtgtgtgtgtgtgtgtgtgttgcgctGCCTCGCAGGCTGACGGGCTGAAGGACAGACAGGTACGTGAGGTTACGGTACTCCAGCAGTCTGCAGCTCAGCGTGGACGAGAAGCTGAGCTCATGACAGCACTGCATCACGTCACTCCACtgacgcacaaacacacacggctcgcgcacacacaccacCGCAAACTCCTGATCCTGAGGAGACTTCCTGTCTGGGAGGAAGGGTCGGAGTTTCTGGCACGGTGctgtgcccAGCTGATCCAGGTTGTGACAGAAGTGCAGCTCCAGGTACGCCAGTCGTATTGAGACACCCACTGAAGGAACAAACCATGGAGCGAAACACGAGTCCACACGAGTACATGCGGCCAGAGCGGTGGGACACACCAGCTGCTCACAGGGCACCTGAGAACCTGATTCACTGTCcg

Function

symbol description
vps13b Predicted to be involved in protein transport. Implicated in Cohen syndrome.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 13B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151434 True 526 lncRNA 0.61 2 26445317 26446288

Neighbor

gene id symbol gene type direction distance location
fbxo43 fbxo43,LOC107739836 coding upstream 44734 26395624 ~ 26400583 (+)
zbtb7b LOC107679557,LOC107739838,LOC107565362 coding upstream 71739 26349459 ~ 26373578 (+)
LOC122358162 LOC107573903,LOC107570793,LOC107745159,LOC108436101,LOC102786116,LOC103364950 coding upstream 98369 26328014 ~ 26346948 (+)
pklr pklr,LOC107698187 coding upstream 119554 26311827 ~ 26325763 (+)
LOC122357920 LOC107570796,LOC107698185,LOC107745157 coding upstream 134243 26301322 ~ 26311074 (+)
LOC122357952 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 97629 26543917 ~ 26548675 (+)
fzd6 fzd6,LOC107704794 coding downstream 126348 26572636 ~ 26579615 (+)
LOC122357544 crtc3,LOC107600472 coding downstream 146330 26592618 ~ 26604854 (+)
LOC122357545 LOC107691856,LOC107675386,LOC107572995 coding downstream 162442 26608730 ~ 26621528 (+)
G102405 vps13b,LOC107671824 non-coding upstream 3723 26437409 ~ 26441594 (+)
G102423 spag1,LOC107739837,LOC107565360 non-coding upstream 56618 26387946 ~ 26388699 (+)
G102385 NA non-coding upstream 167767 26220234 ~ 26277550 (+)
G102403 NA non-coding upstream 175657 26266474 ~ 26269660 (+)
G102393 NA non-coding upstream 208598 26234882 ~ 26236719 (+)
LOC122357364 NA non-coding downstream 119885 26566173 ~ 26568442 (+)
G102492 NA non-coding downstream 161395 26607683 ~ 26623023 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other upstream 15688 26401527 ~ 26429629 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other upstream 61533 26374333 ~ 26383784 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other upstream 269583 26168558 ~ 26175734 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other upstream 409679 26032979 ~ 26035638 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 1386117 25057752 ~ 25059200 (+)

Expression


Co-expression Network