apex2 (apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771)


Basic Information

Item Value
gene id apex2
gene name apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11229329 ~ 11232003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246077.1
caTTGAGACGGACAAAAATAAGGTCAGTGCTTCACACATGCTTGGTGAGTCGCCGGACGTtgtttgacaaataaaaatgaagattgTAACATGGAACATAAACGGTATACGAACGTTTAAAAATGGCATCAAGAAAATTCTGGATTCATTCGATGCCGATATAATCTGCGTTCAAGAGACTAAAGTAACCCgtgacCTGTTGGATGAGAAGACGGCGATTGTTGATGGCTACAATTCATACTTTAGTTTTAGCCGAGGACGAAGCGGATATTCGGGGGTAGCGACCTACTGTAAGGATGCCGCTACTCCATTCCTCGCTGAGGAAGGATTGACAGGTCTGCTGACAAATCACGGAGAGGCTGTCGGTTGCTATGGTGACCAGGTTGAGTTATCCAGTGAGGAGCTTTTGGCGCTGGACAACGAAGGAAGGGCTGTCATCACTCAGCATCACTTcatTGGCAAAGATGGACCACAGAAGCTCACCGTTATCAACGTTTATTGTCCCCGAGCTGATCCAGAAAAGCCTGAGAGAAAACATTACAAGCTCCAGTTTTACCAGCTCCTCCAATGCAGAGCTGAAGCCATCCTGAGCTCAGggagTCACGTGATTGTACTGGGAGATGTTAATACTTCTCATCGACCCATAGACCACTGTGACCCAGATGATGTGGATAACTTTGAAGATAATCCTGGGAGAAAGTGGCTGGATCATTTTCTGTTTGGAACGGCAGATGAAGATGAACTCGCAGACATCTCCCAGAAATCAGCCTCTGGTGGCAAGTTTGTCGACTCCTTTCGCCATTTCCACCCAAAGCGCTCCAACGCCTTCACGTGCTGGTCCACGCTCACGGGTGCCAGGCAGACCAACTATGGCACACGAATCGACTACATCTTCACCGACCACTGTCTGGTGAAGTCTGCCCTTACTGGAGTGGACATTATGCCGGAGGTGGAGGGATCCGATCACTGTCCCGTATGGGCGGAGCTCAGCTGTACCCTCCAGTCTAGTCCCAAGTGCCCACCCCTGTGCACACGTCACATGCCAGAGTTCACGGGCAGACAACAGAAACTCTCGCGCTTCTTTGGCAAAgtttcagagaaagagaggtttTCTAAAGTCTCCGAAGAGGGTCTACCTGGATCACAGGATTCTGGAGAGATTCGCGAAAACCTGAATCCCAAAGTACAGGGAAATAATGTTGGAAAGAAGAGACCTACATGTAGAGAAAAAgatgcaaatgcaaacaaagccaaaagaAGCAATCAAATGAAAACCGAAAGCAATGCTAAAGGAAGTCTTTTAGCTTTCTTTAAGCCTACACAAACACCATCTGTCCCTTCCAGTGGAAACTTGAGCCCGAAACAGACAAAATCCTCTCAGGATAGCCTAGGTAGTGAGAGAGACATTAGGAGCTGCTCTAGAGATGTTCAAATGGAGACCAATCTTTCTTTGGTAACGGATATAGAGACTGACAATCAGGATAAAGTAGAAGGAGAGTCAACATGTATGGTCAAGTCAAAGGACTGTAAGAAGGAGCCGACCACTGGATTTTGGAAAGCGGTTTTGCATGGGCCTCCTCAACCCCCACTGTGTAAATCACACAATGAGCCCTGTGTCTTACGGACTGTGAAAAAATCAGGACCTAATTTAGGGCggcagttttttgtttgtgctcGTCCTCAAGGCCATGCCTCCAATCCTCAGGCCAGGTGTAATTTTTTTACCTGGGTAGATAAAGGGAAGTAGGATAAACTCAAGGAATCTGTATGTTTcgatttgtgtatttttgttttatatgtagcatttttaattatgctaataattttaaaggattaaataaatactgttgttgagacta

Function

symbol description
apex2 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in mitochondrion. Predicted to be active in nucleus. Orthologous to human APEX2 (apurinic/apyrimidinic endodeoxyribonuclease 2).

NR:

description
DNA-(apurinic or apyrimidinic site) lyase 2

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10772 APEX2; AP endonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246077.1 True 1859 mRNA 0.46 6 11229329 11232003

Neighbor

gene id symbol gene type direction distance location
lrif1 NA coding downstream 1208 11223040 ~ 11228121 (-)
LOC122349917 cep104,LOC107668088,LOC107745778,LOC107695283 coding downstream 70043 11141183 ~ 11159286 (-)
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 91788 11134703 ~ 11137541 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 261242 10964582 ~ 10968087 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding downstream 267339 10826429 ~ 10961990 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding upstream 3471 11235474 ~ 11250583 (-)
porcnl LOC107731263,LOC107549961,LOC107668005,LOC107695296,LOC107550497,LOC107745836 coding upstream 18878 11250881 ~ 11256508 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding upstream 119301 11351304 ~ 11392671 (-)
emilin3a LOC107668027,LOC107731182,LOC107549958,LOC107550125,LOC107695222,LOC107745820 coding upstream 213270 11445273 ~ 11451446 (-)
si:dkey-70p6.1 LOC107731205,LOC107668067,LOC107745762,LOC107549481,LOC107549992 coding upstream 249641 11481644 ~ 11504032 (-)
G62977 NA non-coding downstream 19168 11201695 ~ 11210161 (-)
G62974 NA non-coding downstream 23956 11197153 ~ 11205373 (-)
LOC122351000 NA non-coding downstream 404278 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 429366 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 531204 10696335 ~ 10698125 (-)
G62992 NA non-coding upstream 44356 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 174951 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 291019 11523022 ~ 11523638 (-)
G63071 NA non-coding upstream 302546 11534549 ~ 11534772 (-)
G63072 NA non-coding upstream 304040 11536043 ~ 11536517 (-)
smim1 smim1,LOC107668050 other downstream 59856 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 98091 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 238594 10973305 ~ 10990735 (-)
trnar-ccg_26 NA other downstream 689038 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 749278 10440764 ~ 10480051 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 52351 11284354 ~ 11345988 (-)
G63095 NA other upstream 330275 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 546268 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 819354 12051357 ~ 12054530 (-)
G63385 NA other upstream 1031691 12263694 ~ 12264533 (-)

Expression


Co-expression Network