ddx20 (ddx20,LOC107669638,LOC107751451,LOC107594523,LOC107711848,LOC107679786,LOC107556298)


Basic Information

Item Value
gene id ddx20
gene name ddx20,LOC107669638,LOC107751451,LOC107594523,LOC107711848,LOC107679786,LOC107556298
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13525573 ~ 13531588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246192.1
aaGTGTACTTGTCGCCCTCTGCTGGAGGTTGCTGGTATTTTAAGCGGCGTTTCTGCTCCTGTGCGCCAGAGGGCGACGTGATTCACCGCGCAACTCATTTATTCAGCGTCGAAGAACTGAACTGAGACGCAAGAGAAACATGGCGGCGTCCGTGAAAGCGGCGCATGAGCTGCGGTCCAGATCCCGGACGGACGATGTTCTGATTAACGAGGGGGTCGAGTTCAGTTCGCTGCTCCTCTCAAAACCCGTGCTTGAGGGTTTATCTGCCTCTGGCTTTCAGAGACCGTCCCCCATCCAGCTGAAGGCAATCCCGCTGGGAAGATGCGGACTCGATCTTATTGTTCAAGCCAAGTCTGGCACAGGAAAAACCTGTGTGTTCACCACTATCGCTTTGGACTCTCTTATTTTGGAAAACGCAACCACACAGGTGCTGGTTTTGGCCCCCACTCGGGAGATAGCGGTGCAGATTCATGCTGTTGTCATGACGATAGGCAGTGCAATGGAGGGCTTGGAGTGTCACGTGTTCATCGGCGGCAGACCTATCAGTCAAGACAAAGTTAATCTGAAGAAATGCCACATTGCCATTGGTTCACCAGGTCGCATTAAGCAGTTGATAGAGATGGGAGCCCTGACTACATCCTCTATTCGCTTGTTTGTTTTGGATGAGGCTGATAAACTGCTGGAGGatgacagcagcagcagctttcAAGAGCAGATCAAcTGGATATTCTCCTCTTTgccagcaaacaaacaaatgttggCCCTCTCTGCCACCTACCCAGAATCTTTAGCACAATATCTGTCAAGGTACATGAGAGAGCCGACGTTTGTGCGACTGAACCCGACAGACCCCGGACTCCTTGGGCTGAAGCAATACTATAAAATCGTGCCGTCTCATTCATTACCTCATAAAGTCTTTGAGGAGAAGGTGCAGAGTCTCCTTGAACTCTTCAGCAAAATCCCATTTAACCAAGCGCTGGTGTTCTCAAACCTCCATACAAGAGCTCAGCATCTGGCTGATATCCTCTCCTCTAAAGGTTTGCCTGCGGTCTGCATCTCAGGTGGTTTAAGTCAGGATCAGAGGTTGGAGGCGATGTGGAAGCTGAAACAGTATCAGTGTCGAGTTTTAATATCCACTGATCTGACCTCACGTGGTATTGATGCAGAGAAGGTGAACTTGGTGATTAATCTGGATGTTCCTCAGGACTGGGAGACCTACATGCACCGTATTGGTCGTGCTGGACGTTTTGGCACTCTGGGGGTTGCTGTGACCTACTGTTGCTATGGAGAGGAGGAGAACAAAATGATGGCCATTGCTCAGAAATGTTCTCTGAATCTCACTCATTTACCAGATCCAATCCCTGCAGGGATCATGGAAGAGGCTTGTGACTGGGATGTGATAATTGAACCGCCTTCAAAACCCACTCCGAAAATTCCTAAAATTCCTAAAccagagaagaagaaacaagatAAATCTGAAAAGCTTACACTGAAATCGTCCAGAGAGCCTCGCATCTCGACGGACATCCCAGAAAGAACAACAGGTGAAACATCCTACAGTGAAGCTGAAACCAAGGTTAAAAAGCACTCACCCAAACCTGGGAGGCAAATGCCATTACAGTCTGCTACAGACCTCCGGCATGAATCGACTCCTGCTCAAAATGAGCAGAATGCCACCCTTCCCAAAATTCCTCCGCTATCGTCTTTTAAGTTGCATGCACTAAAAGCAATGACTTTCAGTGAGGCTATGGCAGATTATGAGAGTTTCATAACAGAAGGTCCGGGAAGATCTGTTGAAATCATTCGCCAATATGGATTCAGTAGGTGTCGAGATGCAGTTAATGATCATCATAACGGccgtgatgatgatgatgacgatgatgatgatggggGTGATAATTATAAGGCCTATAAATCATATGCTCTAGAAGAATCGCACTCCCATCAAGATCTTCCTCCACCACAGGAGGTTTCAGAGTTGTCCTCTGAGCAGAAGAGTGTGTCATCTGATGATTCATCTTCAGAGTCTGAGATGGAGGTGGAGAGTGAATCAAGCTCTTCAGTCCCTGCTCGGTCTTCACATCACACTCCTGCTCTTTCAGATAAAAAGAATGATTCCTCTTTACCTTCAGCAAGCGCGTTACAACAGGCTAGCAGAAACAAGCAAAGGCCTGGTAAACCTCAATGCCAGAATCCTGGTAAACCTCAATGCCAGAATCCTGCTAAACCTCAATGCCAGAATCCTGCTAAACACCACAGCCTTCCCCAGAAACACCGGCCGGCCTCTAAATCCAGCAGGAAGGCTGCCTCGGTGGGACAGAAGGGGAGGAAAAGGGAGACTGATGAACTGGTAGAGGACGTGCCTGAGCAGGATTACTGGAGTTCATACAGAGCCTGGGTTGAATATTACAATTCATATTATCGCCATTCACCCTATAACTGGATGACTGCGTTTTATATGAATTCTGTCTACATAAAAGAAATGATGAAGCACTAGAAATGTTGCTAAGCAGATGACTCTTGAGCTTTGTAATGCTCACATTTgcgttgtattttttttctctaataaatAGTAATTCTTAA

Function

symbol description
ddx20 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

NR:

description
probable ATP-dependent RNA helicase DDX20 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246192.1 True 2583 mRNA 0.47 11 13525573 13531588

Neighbor

gene id symbol gene type direction distance location
cttnbp2nlb LOC107717506,LOC107669604,LOC107562782,LOC107679769,LOC107711913,LOC107591755 coding downstream 156547 13351816 ~ 13369026 (-)
LOC122350377 LOC107562778,LOC107717538,LOC107669657,LOC107711943,LOC107679735,LOC107591842 coding downstream 226598 13286754 ~ 13298975 (-)
mov10b.2 mov10b.2,LOC107711942,LOC107679724,LOC107591756,LOC107717538 coding downstream 238895 13276193 ~ 13286678 (-)
slc16a1b slc16a1b,LOC107669643,LOC107717534,LOC107591766,LOC107711946,LOC107679710,LOC108425094 coding downstream 461050 13045401 ~ 13064523 (-)
kazna kazna,LOC107669642,LOC107556484,LOC107591771,LOC107711950,LOC107717500,LOC107680131 coding downstream 543351 12948703 ~ 12982222 (-)
rap1aa rap1aa,rap1a,LOC107594522,LOC107679791,LOC107556321,LOC107751450,LOC101074250 coding upstream 13718 13545306 ~ 13551399 (-)
LOC122350013 NA coding upstream 20880 13552468 ~ 13558463 (-)
LOC122350012 NA coding upstream 27293 13558881 ~ 13561981 (-)
LOC122350644 LOC107556303,LOC107669603,LOC107751461,LOC107679797,LOC107711850,LOC107594521 coding upstream 31368 13562956 ~ 13570832 (-)
kdm5bb LOC107751449,LOC107556320,LOC107711851 coding upstream 39491 13571079 ~ 13591176 (-)
G63751 NA non-coding downstream 175302 13347624 ~ 13350271 (-)
G63745 NA non-coding downstream 193186 13332164 ~ 13332387 (-)
G63735 NA non-coding downstream 250705 13261692 ~ 13274868 (-)
G63711 NA non-coding downstream 394356 13128190 ~ 13131217 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 724830 12797379 ~ 12800743 (-)
LOC122350567 NA non-coding upstream 88404 13619992 ~ 13682456 (-)
G63866 NA non-coding upstream 156590 13688178 ~ 13693222 (-)
G63867 NA non-coding upstream 168069 13699657 ~ 13700068 (-)
G63868 NA non-coding upstream 179567 13711155 ~ 13712401 (-)
G63873 NA non-coding upstream 192143 13723731 ~ 13724000 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 279443 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 442201 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1021420 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 1162469 12342160 ~ 12363104 (-)
G63385 NA other downstream 1261040 12263694 ~ 12264533 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 185040 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 277840 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 854012 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 1192124 14723712 ~ 14731391 (-)
G64228 NA other upstream 1247943 14779531 ~ 14781710 (-)

Expression


Co-expression Network