dmrta2 (dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895)


Basic Information

Item Value
gene id dmrta2
gene name dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8272484 ~ 8275399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246326.1
TCCACTGAAGATCTCTCGAGGAAGTTAGTGTCTCACACTGGCTCCAGCAGCAAACTCTGCTCTCTCCCAGACTGTCGGCTGATCGTTGACTTTAAAGTTAGTTTTGCGTTACCTTCGATGGATTTttgcgttttgtttttaaagatcgATTTTATTCGCATGTTAAATTTCTAAGAGAGCGTACTGGGCTGCTTGTGGACAGCGCGCAACAAGTTGAAGATCTCACTGGAAAGAGAACTTTCGTGAAGCATAAGTGTTTTCTCATCTCTTCTCTGGACACTGGCATTCGGGCTGTGTTCTTCCTCGAGTGCTGTGCTGAAGAAATTCGCCGCGTATCGATTCTACTCAATGCTTATGAAACGTCTCCGATCGAAGACTACGGTTGCGCGCGTTTTTTAACCTATCGATCGGCTGTTTGTATTCGGAGAATATGGATCTTCGTTCAGAGATCCCACCCGCCTCCCAGGCAGGGTCGCAGGTTCACCCCGGTGCCGCTGCCGCGGCCGCTGCCGCCTCCATCCCGGTTTCCATGGCCGGTAACCTCTTGAGGGCCCCGCCGCTGTTGCTTCGCGCTACGGAGAAGTATCCACGGACGCCCAAGTGCGCCCGGTGCAGGAATCACGGCGTTGTGTCCGCGCTTAAGGGGCACAAGCGCTACTGCAGATGGAAGGACTGCATGTGTGCCAAATGCACTTTGATCGCGGAGAGACAACGCGTCATGGCTGCTCAGGTTGCGCTCCGCAGACAGCAGGCGCAGGAGGAGAACGAGGCGAGAGAACTTCAGCTGCTCTACGGCACGGCAGAGGGTCTGGCCCTGGCCGCTGCCAACGGCATCATTCCTCCCCGGCAAAACTACGAGGTCTTTGGCCCAGTTAACAACGACACCAACTCTGGTGAATCAAACATCCAAAAGTTCGAGTTGTTCCCCAAGACATCTTTATCTGGATCGGTGACCCCACAGCAGGCGCCTGGAAAGTCCGTATCCACAGACACCGAGTCCGTTCCGGGAATGTCATCTCCAGATATGCGCCACGGCTCGGGTTCGGAGAACGGTGACCGCGAGTCCATCGTGAGTTCCCCGATAGCCAAACCGTTAAAAGACGGCGATGAGACGCCGGGCTCCATCAGTCCGCTCGGCTCAGACTCCGGCTCGGATACGGATAAAGACGAGCAGGAGCCCTCGCCCTCCTCCGCGGCATCGCGACAGATGAACGCCATCGACATCCTAACGAGGGTTTTCCCTAACCACAAGCGCAGCGTCCTGGAGCTCGTGCTGCAGGGATGCGGCAAAGACGTGGTGCAGGCCATAGAGCAAATCCTCAACAACAGCGGCCAAGCCAAGGGCCCAGAGGAGTCCTGGACGGCGGATCGGATGCTGCAGAGCGCGCAGCCGCCCATGTCCTCCACCCCGCGGCCTATGCTACCCGGAACCATGACTCTCAGCAACAGATCCGCCTTCTCTCCACTGCAACCCAACGCGCCACACTTCGGTTCCGACCCGAGCACGTATCCCCTCAGTACGCATTTGGGCTTGAACCCGCTCCGGCTGGCGTACTCGGCTCACAGCAGAGGCCTGGCCTTCATGGCTCCGTACTCCACCACGGGTCTGATGCCAACTCTGGGCTTCCGGCCGCCAATGGACTATGCCTTCAGTGACTTGATCAGAGACAGGACTCTCTTACATAAAGATCAAAGCTACACCAACGGACTGTACGGTCCTCTGGTCAACAACACCCCAGAGAAACAGTGAAATAGTGTTTCCCAAATGTAGACGAAAGTGTTTCTTGTCTTTAAAGACTCATAGGCCTAAGCGTTCCTCATCCCTGAAGACTCGCGGGGCCTCGTGtttctgtatataaaatatgtctAGTTGAATCACcgggaaaaaaatgtgtttggtgGTCGTGGCTTCTTTGAAGTTTGTGattaatcaaaaagaaaatggttACGCGTAAAGGTTAAAGTAGTTTTTACCCATCTTACTGTTGCAGGGTGGCATTACCGACACTGCCTCAGCGCAAAGGGAGCCAGAGGGGAATTATTTTAGACCTTTAGCAGGGTAACCATAGTATTTTCGCGTAAtgtaaattgtgtattttaaaaatccttCACGTTTGTTACAATCCATTTAGATTATTTACCAAACGGATTAAGCTCCGTGCGATAATAGTGCAATTCCTAGAATAATAATTTGCTtcatcgtttaaaaaaaaagggaatattCTAGCATTATTGTTATTGTGGAACGTCTATTATTCACTCTTTTTCTGCTAAGTGTCTGTAAAATCGTGCCATGTTCATTCAACAGAACAGAAGTTCTTTGGATTTAATATGGGTACTGGCTCAAGTAGACATTTGTGTTCCCTTTGTGAGTGATATATTGTGTTACACGACTAAATTATGTATATTGCATTTTCCTGATGAACTCATATTTGTCTAAGTCATTTTctcaaaaaacatcaaaagggatctaaaaaaaaaaagatgtttgttGAATGAGATCTTGCTGCGTTGCGAAGTGTACATTTCTCTGTGTaaattttgcaaaataaataaatgttattttattctta

Function

symbol description
dmrta2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within corticotropin hormone secreting cell differentiation and telencephalon development. Predicted to be active in nucleus. Is expressed in central nervous system; ectoderm; endocrine system; and neural keel. Orthologous to human DMRTA2 (DMRT like family A2).

NR:

description
PREDICTED: doublesex- and mab-3-related transcription factor A2 isoform X2

GO:

id name namespace
GO:0021537 telencephalon development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246326.1 True 2573 mRNA 0.50 2 8272484 8275399

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279,LOC106613892 coding downstream 135209 8036622 ~ 8137275 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding downstream 509275 7750415 ~ 7763209 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding downstream 532028 7688861 ~ 7740456 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 620178 7594983 ~ 7652306 (-)
LOC122350884 NA coding downstream 889672 7380546 ~ 7382812 (-)
faf1 faf1,LOC107743872,LOC107707577 coding upstream 9832 8285231 ~ 8346021 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding upstream 81448 8356847 ~ 8371737 (-)
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding upstream 97258 8372657 ~ 8391494 (-)
calr calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943 coding upstream 142031 8417430 ~ 8422195 (-)
tor3a tor3a,LOC107657890,LOC107548256,LOC107699619,LOC107743897,LOC107599799,LOC107752435 coding upstream 147340 8422739 ~ 8426706 (-)
LOC122351107 NA non-coding downstream 3267 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 298464 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 317842 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 493920 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 609225 7662217 ~ 7663259 (-)
G62076 NA non-coding upstream 151886 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 232492 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 436638 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 638083 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 643359 8918758 ~ 8920904 (-)
LOC122350139 elavl4 other downstream 39710 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 584922 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1169491 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1216055 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 1455737 6814471 ~ 6816747 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 116946 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 371871 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 376905 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 981844 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1424995 9700394 ~ 9708621 (-)

Expression


Co-expression Network