faf1 (faf1,LOC107743872,LOC107707577)


Basic Information

Item Value
gene id faf1
gene name faf1,LOC107743872,LOC107707577
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8285231 ~ 8346021 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247528.1
ACGGCAGCCGTAAGATGTTTCCGTTGCTTTGAACGCCGATCCAGAACAGCAAAGTGACGataacagaaaaactgaaagccACCAAACACTGACAACACGGCCccaaagagcagcatttatacTCAGTTACGTGCCGCACACTGATAAGCCGTGTCCTGAGCTGCTCTTTTGAAATCGGTGGTTGatatttttggggtttttacATGAGTCGTTAGCCTCTCTCTGCAATGGCCTCCGACAGCAACATGGACAGAGAAATGATCCTGGCCGACTTTCAGgcaTGTACCGGAATTGACAACATTGCTGAGGCGATCACACTTCTGGAACTCAATAACTGGGACTTGGTGGCAGCCATCAATGGAGTGATACCACAAGAAAATGGGATCTTGCAAAGTAATTTCTCAAGTGAAGCATCTCAGACCAGCCCCTATGGACCCCACAACCAATCAGAAGCCACAGCACCTGTGCCCTCAGCCCCGCCTTCTtcagcatcagcatcagcatcggcatcagcatcagcatcatCATCTTCCTCACCCCCATCATCATCCAGCCCAGCCTTCTGCCCTGTCCAGCCCTCCCGGCACATAGTGGAACGGCAGTCGCGGATGCTCAACTTTCGCGTGGAGTACAGACAGCGCTCCACAGAAGTGGTGCTGGAAGATGCCAGCACAGTCGgagatattaaatctattttagaGACCGAGCTACAGGTGCCTGTCtctaaaatgcagttaaaaggCTGGAAGAGTGGAGACGTATCTGACAGTACTGTTCTGCGGAGTTTACATCTGCCTAAGAACAACAGTTTGTATGTGCTCACCCCTGATATCACCCCTTCAGCCAGCACCAGCCAGAGCAGCAGTGCCCAGCAAGGGTTGTCGAATCAAAACTACCTGCTCGTCATTAGCCACCGTGAAGCACAGAGAGATTACAGCCTCAACTTCCCTGCCAGCAAAACCATTCAGGAGGTGAAAAGGAACATTTCAGACCTGACAAACATCCCTGTGCGGCATCAACAGTGGGACGGCTGGCCTGCCTCTGCCTCAGATGACTCGATGACTCTGGCCTCCAGTGGAATCAGTTACCCCTGCCACCACCTGACCGTGTGCAGAAGATCTTCTCCTGCCCTTACGGTGGACCAGACAGACGAGTGCACAGATGTTCACATGGTCAGTGACAGTGAGGGAGATGATTTCGAAGATGCACCTGAATTTGGTGTAGATGAATCTGAAATCTTTGGCATGGGAAGCTCAAGTTGTCGAAAGTCTCCGATGATGCCAGAGAACAGTGAAAATGAGGGTGATGCCTTACTGCACTTTACTGCTGAATTTTCTAGAAGATATGGCGATTGCCATCCCGTGTTCTACATCGGCTCATTGGAAGCAGCATCTCAAGAGGCCTTTTATGGCAAAGCCAGAGATAGAAAACTGCTGGCCATCTACCTCCACAACGATGAGAGTGTCCTCAGTAACGTGTTCTGCTCTCAGATGATGTGCGCAGACTCCATAGTGTCATATCTCAGCCAGAACTTCATCACATGGGCCTGGGACGTTACTAAAGAAGCTAATAAAGCCAGACTACTCACGATGTGTACAAGGCACTTTGGCAGTGTTGTTGCACAGACCATTCGGACGTACAAGACTGACCAATTCCCATTACTTTTAATTGTCATGGGCAAACGGACATCAAATGaagttttaaatgtcattcaagGCAACACAACAGTGGATGAGCTCATGATGAGACTCATGGGAGCCATGGAGATCTTCACAGCACAGCAACAAGAAGACATCAAAGATGAGGATGAACGTGAAGCCAGAGAAATGGTCAAAAGAGAGCAGGATGAAGCTTATCGTGTGTCTCTGGAGGCTGACCGTAAAAAGAGAGAAGCGCAAGAGCGAGAAGAGGCAGAGCAAGTTCGTCAGGAGCGAATCAAGAAAGAGCAGGAGGAGGAAAGAGAGGCTATTCGTCTCTCATTGGAGCAGGCCCTGCCACCAGAGCCCAAAGAAGAGGGCGGAGAGCCAATCAGCAAGCTGCGCATCCGGACGCCAAGTGGCGAGTTTTTAGAAAGGCGGTTCCTGGGCAGCTGTAAACTCCAGGTCCTATTTGACTTCGTCGCCTCCAAGGGCTACCCATCTGACGAGTTCAAACTGCTCACCACCTTTCCACGCAGAATTATAACGCAGTTGGACCCGGCATGGAGTCTGGTGGAGGCTAAACTCTTCCCTCAGGAGACCCTGTTCCTGGAGGCCAAAGAGTAGGACTGATCGGAGACGTCCTGAGGGCGAACAAGAATAAGCAAAGAACTTTTAGCATGATGTCCACAGCGACcagacacacacccacatacacacaagcCTTCACACACTATCACACAGTGCGTTGTATATGAATGCTGAGTGTACATTTTATGCACACAGAGGCCTTCACAAGCACATGGATAAACGATCACTCTCCTCCCATAACTGCAGTGTAATGTTCTTTTTCCACCCAAAACGTAAGGTAaccgagaaaaaaaaacattaaaaataaaaaaaataaacaagcagaGGTGTGGAAGTCTAAAACAGCCAGCCTCACAGACAAGGACTTCTCGCTGAGGCTGCTTTTTAGACATGTTTTGTGttgaaatgaagcaaaaaaaaaaatcaattaaaaaaaaaaaaaaaaaaaaaagacaaataaataaaagt
>XM_043247529.1
ACGGCAGCCGTAAGATGTTTCCGTTGCTTTGAACGCCGATCCAGAACAGCAAAGTGACGataacagaaaaactgaaagccACCAAACACTGACAACACGGCCccaaagagcagcatttatacTCAGTTACGTGCCGCACACTGATAAGCCGTGTCCTGAGCTGCTCTTTTGAAATCGGTGGTTGatatttttggggtttttacATGAGTCGTTAGCCTCTCTCTGCAATGGCCTCCGACAGCAACATGGACAGAGAAATGATCCTGGCCGACTTTCAGgcaTGTACCGGAATTGACAACATTGCTGAGGCGATCACACTTCTGGAACTCAATAACTGGGACTTGGTGGCAGCCATCAATGGAGTGATACCACAAGAAAATGGGATCTTGCAAAGTAATTTCTCAAGTGAAGCATCTCAGACCAGCCCCTATGGACCCCACAACCAATCAGAAGCCACAGCACCTGTGCCCTCAGCCCCGCCTTCTtcagcatcagcatcagcatcggcatcagcatcagcatcatCATCTTCCTCACCCCCATCATCATCCAGCCCAGCCTTCTGCCCTGTCCAGCCCTCCCGGCACATAGTGGAACGGCAGTCGCGGATGCTCAACTTTCGCGTGGAGTACAGACAGCGCTCCACAGAAGTGGTGCTGGAAGATGCCAGCACAGTCGgagatattaaatctattttagaGACCGAGCTACAGGTGCCTGTCtctaaaatgcagttaaaaggCTGGAAGAGTGGAGACGTATCTGACAGTACTGTTCTGCGGAGTTTACATCTGCCTAAGAACAACAGTTTGTATGTGCTCACCCCTGATATCACCCCTTCAGCCAGCACCAGCCAGAGCAGTGCCCAGCAAGGGTTGTCGAATCAAAACTACCTGCTCGTCATTAGCCACCGTGAAGCACAGAGAGATTACAGCCTCAACTTCCCTGCCAGCAAAACCATTCAGGAGGTGAAAAGGAACATTTCAGACCTGACAAACATCCCTGTGCGGCATCAACAGTGGGACGGCTGGCCTGCCTCTGCCTCAGATGACTCGATGACTCTGGCCTCCAGTGGAATCAGTTACCCCTGCCACCACCTGACCGTGTGCAGAAGATCTTCTCCTGCCCTTACGGTGGACCAGACAGACGAGTGCACAGATGTTCACATGGTCAGTGACAGTGAGGGAGATGATTTCGAAGATGCACCTGAATTTGGTGTAGATGAATCTGAAATCTTTGGCATGGGAAGCTCAAGTTGTCGAAAGTCTCCGATGATGCCAGAGAACAGTGAAAATGAGGGTGATGCCTTACTGCACTTTACTGCTGAATTTTCTAGAAGATATGGCGATTGCCATCCCGTGTTCTACATCGGCTCATTGGAAGCAGCATCTCAAGAGGCCTTTTATGGCAAAGCCAGAGATAGAAAACTGCTGGCCATCTACCTCCACAACGATGAGAGTGTCCTCAGTAACGTGTTCTGCTCTCAGATGATGTGCGCAGACTCCATAGTGTCATATCTCAGCCAGAACTTCATCACATGGGCCTGGGACGTTACTAAAGAAGCTAATAAAGCCAGACTACTCACGATGTGTACAAGGCACTTTGGCAGTGTTGTTGCACAGACCATTCGGACGTACAAGACTGACCAATTCCCATTACTTTTAATTGTCATGGGCAAACGGACATCAAATGaagttttaaatgtcattcaagGCAACACAACAGTGGATGAGCTCATGATGAGACTCATGGGAGCCATGGAGATCTTCACAGCACAGCAACAAGAAGACATCAAAGATGAGGATGAACGTGAAGCCAGAGAAATGGTCAAAAGAGAGCAGGATGAAGCTTATCGTGTGTCTCTGGAGGCTGACCGTAAAAAGAGAGAAGCGCAAGAGCGAGAAGAGGCAGAGCAAGTTCGTCAGGAGCGAATCAAGAAAGAGCAGGAGGAGGAAAGAGAGGCTATTCGTCTCTCATTGGAGCAGGCCCTGCCACCAGAGCCCAAAGAAGAGGGCGGAGAGCCAATCAGCAAGCTGCGCATCCGGACGCCAAGTGGCGAGTTTTTAGAAAGGCGGTTCCTGGGCAGCTGTAAACTCCAGGTCCTATTTGACTTCGTCGCCTCCAAGGGCTACCCATCTGACGAGTTCAAACTGCTCACCACCTTTCCACGCAGAATTATAACGCAGTTGGACCCGGCATGGAGTCTGGTGGAGGCTAAACTCTTCCCTCAGGAGACCCTGTTCCTGGAGGCCAAAGAGTAGGACTGATCGGAGACGTCCTGAGGGCGAACAAGAATAAGCAAAGAACTTTTAGCATGATGTCCACAGCGACcagacacacacccacatacacacaagcCTTCACACACTATCACACAGTGCGTTGTATATGAATGCTGAGTGTACATTTTATGCACACAGAGGCCTTCACAAGCACATGGATAAACGATCACTCTCCTCCCATAACTGCAGTGTAATGTTCTTTTTCCACCCAAAACGTAAGGTAaccgagaaaaaaaaacattaaaaataaaaaaaataaacaagcagaGGTGTGGAAGTCTAAAACAGCCAGCCTCACAGACAAGGACTTCTCGCTGAGGCTGCTTTTTAGACATGTTTTGTGttgaaatgaagcaaaaaaaaaaatcaattaaaaaaaaaaaaaaaaaaaaaagacaaataaataaaagt

Function

symbol description
faf1 Acts upstream of or within cartilage development; fin regeneration; and pharyngeal system development. Is expressed in pharyngeal arch; pharyngeal arch 1; pharyngeal arch 2; and pharyngeal arch 3-7. Orthologous to human FAF1 (Fas associated factor 1).

NR:

description
FAS-associated factor 1-like

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247528.1 True 2696 mRNA 0.48 19 8285231 8346021
XM_043247529.1 False 2693 mRNA 0.48 19 8285231 8346021

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding downstream 9832 8272484 ~ 8275399 (-)
agbl4 agbl4,LOC107603279,LOC106613892 coding downstream 147956 8036622 ~ 8137275 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding downstream 522022 7750415 ~ 7763209 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding downstream 544775 7688861 ~ 7740456 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 632925 7594983 ~ 7652306 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding upstream 10826 8356847 ~ 8371737 (-)
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding upstream 26636 8372657 ~ 8391494 (-)
calr calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943 coding upstream 71409 8417430 ~ 8422195 (-)
tor3a tor3a,LOC107657890,LOC107548256,LOC107699619,LOC107743897,LOC107599799,LOC107752435 coding upstream 76718 8422739 ~ 8426706 (-)
LOC122351129 NA coding upstream 81594 8427615 ~ 8427687 (-)
LOC122351107 NA non-coding downstream 16014 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 311211 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 330589 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 506667 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 621972 7662217 ~ 7663259 (-)
G62076 NA non-coding upstream 81264 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 161870 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 366016 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 567461 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 572737 8918758 ~ 8920904 (-)
LOC122350139 elavl4 other downstream 52457 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 597669 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1182238 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1228802 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 1468484 6814471 ~ 6816747 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 46324 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 301249 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 306283 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 911222 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1354373 9700394 ~ 9708621 (-)

Expression


Co-expression Network