gadd45ga (gadd45ga,LOC107724875,LOC107667521,LOC107686412,LOC107602833,LOC107600042,LOC108412735)


Basic Information

Item Value
gene id gadd45ga
gene name gadd45ga,LOC107724875,LOC107667521,LOC107686412,LOC107602833,LOC107600042,LOC108412735
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14838764 ~ 14840345 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247974.1
CCGTCCCGTATAAAACGCGGCGGAGCGCTTGACACGGCATCACAAACCCGCCGCTCACGACCAGAGAAAGATACACGCGAAACGCGACCTACCCTTGGATTTAAACAATGACTTTTGAAGAATTTAGTGGACAGGATAACGCAGCTGCCACTGGCGATAGAATGCAGAGCGCAGGAACGGCACTGGAGGAGCTTCTGGTCTCCGCAAAGAAGCAGGACTGCCTTACCGTTGGGGTGTATGAGTCTGCACAAGTCATGAATGTTGACCCAGACAGCGTGGCTTTTTGCGTCCTGGCTACGGATGAGGAGTACGAATGTGACATCGCCTTGCAGATCCACTTCACTCTCATCCAAGCCTTCTGCTTCGACAACGACATCAACATTGTTCGTGTGAATGACATTGAACGTCTTGCTGACATTGTGGGCAGCGATCAGGACGAGGAACCTAAGGACGCACACTGCATACTTGTAACGAGCCCCAATGCTGACTCGTGGAAAGATCCTGCTCTTGAGAGATTGGGCTTGTTCTGTGAGGAGAGCCGCAATGTCTACGAATGGGTGCCTACCATTACTCTGCCGGAGCGCTGATAGGAGATGGCTTTGGCACGTGAATGAAACCCGAAACAAGCGGAAGACGTCCATCCTAAAGGGTACACCGGTGCAAAGCGAGAAAGCTTTGAGATATTGTCTGGATTACCCTCACAACTGGGAAGATAAAAGTGCACTGACCCAGCGTACGGTTGGCCGTCCTGGAAAAGCTGATGTTCAGAATCTTTTTTTTGGACGAGCATGGAAAAGTCAAGCCTCCTGTGCCATCCAAGTCTGTTGTGGTGGAGACAATAGGAGAGACATGGACAGGTGGAGCGTGAGAGCAGGTTTATGAGACTGAAGGAGAAGAAGAGCATTGGAATTCTTGAGGAATGAGATGTGGATTTTAAAGAGGAACTATGTTTGAGTGACATTTTGAAGATGTTTTGAGGTCTAATGGGCACTTGGGATGTTGTTCGAAAAATATTACATGGACACTAGTGTAACTTGTCTTTTGTGATATCCTGGGGGGAAAGATGGATTTTATTAAGTTGTGCATTTTGTCAAATATTCATAATGCGatgtaaaaattgtgtttaatgcACCATTTCTGCAATGAATAAATaccttaaaaatgcaa

Function

symbol description
gadd45ga Predicted to be involved in regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including anterior axial hypoblast; endocrine system; mesoderm; nervous system; and pectoral fin. Orthologous to human GADD45G (growth arrest and DNA damage inducible gamma).

NR:

description
growth arrest and DNA damage-inducible protein GADD45 gamma-like

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247974.1 True 1167 mRNA 0.47 4 14838764 14840345

Neighbor

gene id symbol gene type direction distance location
vgll4l vgll4l,LOC107724882,LOC107667543,LOC107711841,LOC107600043,LOC107602859,LOC107686413,LOC107686414 coding downstream 80113 14741309 ~ 14758651 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001 coding downstream 115819 14707862 ~ 14722945 (-)
ralgds si:ch211-251j10.3,LOC107667531,LOC107724899,LOC107602853,LOC107600003,LOC107667907,LOC107711877 coding downstream 145164 14671725 ~ 14693600 (-)
smarcb1a smarcb1a,smarcb1,LOC107602851,LOC107600005,LOC107667904 coding downstream 168358 14664819 ~ 14670406 (-)
gstt1a gstt1a,LOC107724878,LOC107667523,LOC107602832,LOC107689282,LOC107711839,LOC107600045 coding downstream 198731 14638563 ~ 14640033 (-)
creb3l3l creb3l3l,LOC107711890,LOC107686399,LOC107724916,LOC107667558,LOC107599998 coding upstream 2149 14842494 ~ 14847964 (-)
nim1ka nim1k,LOC107602863,LOC107667564,LOC107686411,LOC107599996,LOC108412738 coding upstream 8161 14848506 ~ 14858964 (-)
znf131 znf131,LOC107667557,LOC107602864,LOC107724914,LOC107686396,LOC107711893 coding upstream 19292 14859637 ~ 14863781 (-)
ghra LOC107602865,LOC107724907,LOC107711892 coding upstream 32841 14873186 ~ 14903503 (-)
fbxo4 LOC107667563,LOC107686410,LOC107724879,LOC107599997,LOC107602866,LOC107711844 coding upstream 69573 14909918 ~ 14914015 (-)
G64236 NA non-coding downstream 148 14838381 ~ 14838616 (-)
G64227 NA non-coding downstream 59400 14778898 ~ 14779364 (-)
G64223 NA non-coding downstream 69493 14768973 ~ 14769271 (-)
G63997 NA non-coding downstream 540174 14298291 ~ 14298590 (-)
G63981 NA non-coding downstream 569001 14268604 ~ 14269763 (-)
G64238 NA non-coding upstream 178 14840523 ~ 14840766 (-)
G64229 sepp1a,LOC107576224 non-coding upstream 25453 14865798 ~ 14869687 (-)
G64278 NA non-coding upstream 159386 14999731 ~ 15000001 (-)
G64337 NA non-coding upstream 328333 15168678 ~ 15170180 (-)
G64338 NA non-coding upstream 331599 15171944 ~ 15172605 (-)
G64228 NA other downstream 57054 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 107373 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 383521 14385600 ~ 14455243 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 975514 13809428 ~ 13863250 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other downstream 1118250 13716628 ~ 13720514 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other upstream 443516 15283861 ~ 15284130 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 808881 15649226 ~ 15700896 (-)
LOC122350093 NA other upstream 1567489 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 2206122 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 2480031 17320376 ~ 17401228 (-)

Expression


Co-expression Network